View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21550_high_19 (Length: 244)

Name: NF21550_high_19
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21550_high_19
NF21550_high_19
[»] chr1 (1 HSPs)
chr1 (1-227)||(1717028-1717254)
[»] chr3 (16 HSPs)
chr3 (1-227)||(19848801-19849030)
chr3 (1-227)||(19950938-19951164)
chr3 (1-227)||(20036681-20036910)
chr3 (1-218)||(26646833-26647044)
chr3 (1-224)||(19989339-19989562)
chr3 (78-227)||(20016356-20016503)
chr3 (144-227)||(19853326-19853409)
chr3 (145-224)||(19812097-19812176)
chr3 (144-227)||(19838198-19838281)
chr3 (144-227)||(19955889-19955972)
chr3 (144-227)||(19857885-19857968)
chr3 (144-224)||(19818374-19818454)
chr3 (1-55)||(19956070-19956124)
chr3 (144-224)||(20045940-20046020)
chr3 (145-224)||(26651850-26651929)
chr3 (143-227)||(24840194-24840278)
[»] chr5 (2 HSPs)
chr5 (143-227)||(26355147-26355231)
chr5 (1-63)||(26355005-26355067)
[»] chr8 (2 HSPs)
chr8 (1-227)||(22652166-22652392)
chr8 (103-159)||(22685843-22685899)
[»] chr4 (1 HSPs)
chr4 (144-224)||(6397959-6398039)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1717254 - 1717028
Alignment:
Q  1 tgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacctccttgtttcctataaagttgttctcttgcaaggatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717254 tgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacctccttgtttcctataaagttgttctcttgcaaggatca 1717155  T
Q  101 atttttcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagt 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1717154 atttatcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaatcccctaaaaccataatatcctccaaagt 1717055  T
Q  201 tattgtggcttcaccaaaaggaaacac 227  Q
     ||||||||||||||||||||||||||    
T  1717054 gattgtggcttcaccaaaaggaaacac 1717028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 19849030 - 19848801
Alignment:
Q  1 tgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacctccttgtttcctataa---agttgttctcttgcaagga 97  Q
    |||||||||||||||||||||||||  |||| |||||||||  ||| ||| |||| |  |||||| ||||||  || |   ||||||| |||||||| ||    
T  19849030 tgttcaatttcactacctttatcaatgaaaatatccatccagtatgatgtgctagccacacctccatgtttcgcattagtaagttgttgtcttgcaatga 19848931  T
Q  98 tcaatttttcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaa 197  Q
    | |  ||||||||||||||||||||||||||||| | ||| |||  |||||||||||||||||  ||||| |||||||||| |||||| |||||||||||    
T  19848930 tgagcttttcttcaatctctttcatttcttggtcatgaagtgaagtgaaaacaggatcaccaagaacaggataaccccctagaaccatgatatcctccaa 19848831  T
Q  198 agttattgtggcttcaccaaaaggaaacac 227  Q
    ||| ||||| ||||||||||| | ||||||    
T  19848830 agtgattgttgcttcaccaaaggaaaacac 19848801  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 19951164 - 19950938
Alignment:
Q  1 tgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacctccttgtttcctataaagttgttctcttgcaaggatca 100  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||| ||||| | |||||  ||   || || |||||   | |||||||| ||| |    
T  19951164 tgttcaatttcactacctttatcagtgaaaatatccatccataatgttgctctagccatacctgttttagtcttagaaagtgtctgtcttgcaatgatga 19951065  T
Q  101 atttttcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagt 200  Q
      |||||||||| ||||||||||||||| |||| ||| | || |||||||||||||||||  |||||||||||||| |||||||||| ||||||||||||    
T  19951064 gcttttcttcaacctctttcatttcttgatcttgaagtgtaatgaaaacaggatcaccaagaacagggtaaccccccaaaaccataacatcctccaaagt 19950965  T
Q  201 tattgtggcttcaccaaaaggaaacac 227  Q
     || || || |||||||| ||||||||    
T  19950964 gatagttgcctcaccaaatggaaacac 19950938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 20036681 - 20036910
Alignment:
Q  1 tgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacctccttgtttcctataa---agttgttctcttgcaagga 97  Q
    |||||||||||||||||||||||||  |||| |||||||||  ||| ||| |||| |  |||||| ||||||  || |   ||||||| |||||||| ||    
T  20036681 tgttcaatttcactacctttatcaatgaaaatatccatccagtatgatgtgctagccacacctccatgtttcgcattagtaagttgttgtcttgcaatga 20036780  T
Q  98 tcaatttttcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaa 197  Q
    | |  ||||||||||||||||||||||||||||| | ||| |||  |||||||||||||||||  ||||| ||||| |||| |||||| |||||||||||    
T  20036781 tgagcttttcttcaatctctttcatttcttggtcatgaagtgaagtgaaaacaggatcaccaagaacaggataacctcctagaaccatgatatcctccaa 20036880  T
Q  198 agttattgtggcttcaccaaaaggaaacac 227  Q
    | | | ||| ||||||||||| | ||||||    
T  20036881 aatgactgttgcttcaccaaaggaaaacac 20036910  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 26647044 - 26646833
Alignment:
Q  1 tgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacctccttgtttcctataaagttgttctcttgcaaggatca 100  Q
    ||||||||||||||||||||||| |  |||  ||| |||||||||| |||||||| | ||||    ||||| |   ||||||| |||||||||||||| |    
T  26647044 tgttcaatttcactacctttatccatgaaactatcgatccataatggtgttctagccttaccg---tgtttac---aaagttgctctcttgcaaggatga 26646951  T
Q  101 atttttcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagt 200  Q
     ||| | ||| | |||| ||||||||||||||||||| |||| |||||||||||| ||||| | ||| |||||||| |||||||| ||||||||||||||    
T  26646950 gtttcttttccacctctctcatttcttggtcttcaagtgaaatgaaaacaggatccccaataataggataaccccccaaaaccatgatatcctccaaagt 26646851  T
Q  201 tattgtggcttcaccaaa 218  Q
     || || |||||||||||    
T  26646850 aatagttgcttcaccaaa 26646833  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 19989562 - 19989339
Alignment:
Q  1 tgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacctccttgtttcctataaagttgttctcttgcaaggatca 100  Q
    ||||||| |||| ||||||||||||  ||||||||||||||||   |||||||||   || ||   |   || |||||||||| | |||| |||||||||    
T  19989562 tgttcaagttcattacctttatcaatgaaaacatccatccatacccttgttctagcattagctgacttagtcttataaagttgctgtctttcaaggatca 19989463  T
Q  101 atttttcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagt 200  Q
    |||  | ||| | |||||||||||||||||||| ||| | || |||||||||||||||||  | ||||||||||||||||||||||| ||| ||||||||    
T  19989462 attccttttccacctctttcatttcttggtcttgaagtgtaatgaaaacaggatcaccaagaatagggtaaccccctaaaaccataacatcttccaaagt 19989363  T
Q  201 tattgtggcttcaccaaaaggaaa 224  Q
     || || || |||||||| |||||    
T  19989362 gatagttgcctcaccaaatggaaa 19989339  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 227
Target Start/End: Original strand, 20016356 - 20016503
Alignment:
Q  78 aagttgttctcttgcaaggatcaatttttcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaaccccct 177  Q
    |||||| | |||||||||||||||||| | ||| | ||||  ||||| |  ||||||||| || | |||||||||||| ||||||||||||||||| ||     
T  20016356 aagttgctgtcttgcaaggatcaatttgttttctacctct--catttttgtgtcttcaagtgagatgaaaacaggatcgccaatgacagggtaaccaccc 20016453  T
Q  178 aaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaacac 227  Q
    ||||||||||||||||||||||| ||||| |||||| |||| ||||||||    
T  20016454 aaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacac 20016503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 19853409 - 19853326
Alignment:
Q  144 gaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaacac 227  Q
    ||||| |||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||| || |||||    
T  19853409 gaaaataggatcaccaatgatagggtaaccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacac 19853326  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 19812176 - 19812097
Alignment:
Q  145 aaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaa 224  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| || || ||||||||||| |||||    
T  19812176 aaaataggatcaccaatgatagggtaaccccccaaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaa 19812097  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 19838281 - 19838198
Alignment:
Q  144 gaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaacac 227  Q
    |||||||| |||||||||||||||||||||||| |||||||| | ||| |||||||| ||||| || |||||||| ||||||||    
T  19838281 gaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacac 19838198  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 19955972 - 19955889
Alignment:
Q  144 gaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaacac 227  Q
    |||||||| |||||||||||||||||||||||| |||||||| | ||| |||||||| ||||| || |||||||| ||||||||    
T  19955972 gaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacac 19955889  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 19857968 - 19857885
Alignment:
Q  144 gaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaacac 227  Q
    ||||||||||||||||| || || ||||||||| ||||||| || |||||| | ||| ||||| ||||||||||| ||||||||    
T  19857968 gaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacac 19857885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 19818454 - 19818374
Alignment:
Q  144 gaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaa 224  Q
    |||||||||||||||||||| ||| |||||||| ||||| || | |||||||||||| || || || |||||||| |||||    
T  19818454 gaaaacaggatcaccaatgataggataaccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaa 19818374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19956124 - 19956070
Alignment:
Q  1 tgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctag 55  Q
    |||||||||||||||||||||||||  |||| ||||||||||| || ||||||||    
T  19956124 tgttcaatttcactacctttatcaatgaaaatatccatccatagtgatgttctag 19956070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 20046020 - 20045940
Alignment:
Q  144 gaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaa 224  Q
    ||||||| |||| ||||||| ||||||||| || ||||| || ||||||||||| |||||||| |  |||||||| |||||    
T  20046020 gaaaacatgatcgccaatgatagggtaacctcccaaaacaatgatatcctccaaggttattgttgtctcaccaaagggaaa 20045940  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 26651929 - 26651850
Alignment:
Q  145 aaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaa 224  Q
    |||||||||| ||||| || || ||| ||||| ||||| || | |||||||||||| ||||| || ||||||||||||||    
T  26651929 aaaacaggataaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaa 26651850  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 24840194 - 24840278
Alignment:
Q  143 cgaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaacac 227  Q
    |||||||||||  ||||| || || ||| ||||| ||||| || | |||||||||||| ||||| |||||||||||  |||||||    
T  24840194 cgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacac 24840278  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 26355147 - 26355231
Alignment:
Q  143 cgaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaacac 227  Q
    |||||| ||||||||||||||||||||||||||| | |||||||| ||||||||||  ||  || || |||||||| ||||||||    
T  26355147 cgaaaataggatcaccaatgacagggtaacccccaagaaccataacatcctccaaacctaccgtcgcctcaccaaacggaaacac 26355231  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 26355005 - 26355067
Alignment:
Q  1 tgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacct 63  Q
    ||||||| ||||||||||||||| |  ||||||||||||||||||| | |||| ||| |||||    
T  26355005 tgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacct 26355067  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22652166 - 22652392
Alignment:
Q  1 tgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacctccttgtttcctataaagttgttctcttgcaaggatca 100  Q
    ||||||||||||||||||||||| |  |||| ||||||||||||||||| ||||| |  || |  ||  ||  || ||| |  || ||||||||||||||    
T  22652166 tgttcaatttcactacctttatcgatgaaaatatccatccataatgttgctctagcctgactttgtttcttagtagaaattgtttgtcttgcaaggatca 22652265  T
Q  101 atttttcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagt 200  Q
      || | ||| | |||| |||| | ||  |||||||| || | |||||||||||||||||  |||||||||||| |||||| ||||| ||| || || ||    
T  22652266 tcttcttttccacctctctcatcttttcatcttcaagtgagatgaaaacaggatcaccaagaacagggtaaccctctaaaatcataacatcttctaaggt 22652365  T
Q  201 tattgtggcttcaccaaaaggaaacac 227  Q
     || || || |||||||| ||||||||    
T  22652366 gatagttgcctcaccaaatggaaacac 22652392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 22685843 - 22685899
Alignment:
Q  103 ttttcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcacca 159  Q
    |||| |||||||||||||||||||||||||| ||| |||  ||||||||||||||||    
T  22685843 ttttgttcaatctctttcatttcttggtcttgaagtgaagtgaaaacaggatcacca 22685899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 6397959 - 6398039
Alignment:
Q  144 gaaaacaggatcaccaatgacagggtaaccccctaaaaccataatatcctccaaagttattgtggcttcaccaaaaggaaa 224  Q
    |||||||||||| ||| ||| ||||||  |||| || || || |||||||||||||||||||| || |||||||| |||||    
T  6397959 gaaaacaggatccccagtgatagggtagacccccaagacaatgatatcctccaaagttattgttgcctcaccaaagggaaa 6398039  T

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