View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21550_high_20 (Length: 241)
Name: NF21550_high_20
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21550_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 39082607 - 39082835
Alignment:
| Q |
2 |
acaataattaagccctacttgccatttgttatatatttttactctttatttcgagggattagtcctaacagtttgaatatttttctacacaaatgttgca |
101 |
Q |
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| T |
39082607 |
acaataattaagccctacttgccatttgttatatatttttactctttattttgagagattagtcctaacagtttgaatatttttctacacaaatgttgca |
39082706 |
T |
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| Q |
102 |
ggtgcaggttcggatactttcacgtggtcaacaatgattatacacattggcaacaatatgcaatcggtggaagttcgtccccaactattttcagtcaagg |
201 |
Q |
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| T |
39082707 |
ggtgcaggttcggatactttcatgtggtcaacaatgattatacacattggcaacaatatgcaattggtggaagttcgtccccaactatttttagtcaagg |
39082806 |
T |
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| Q |
202 |
caatagatttctagctccagatgatgatg |
230 |
Q |
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| T |
39082807 |
caatagatttctagctccagatgatgatg |
39082835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 31727248 - 31727458
Alignment:
| Q |
6 |
taattaagccctacttgccatttgttatatatttttactctttatttcgagggattagtcctaacagtttgaatatttttctacacaaatgttgcaggtg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||| || |
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| T |
31727248 |
taattaagccctacttgccatttgttatatatttttactctt--------------attcctaacagtttgaaattttttctacacgaatgttgcagatg |
31727333 |
T |
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| Q |
106 |
caggttcggatactttcacgtggtcaacaatgattatacacattggcaacaatatgcaatcggtggaagttcgtccccaactattttcagtcaaggcaat |
205 |
Q |
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| T |
31727334 |
caggttcggatactttcatgtggtgaacaatgattacacacattggcaacaatatgcaatcggtggaagttcgtcccgaactatttttagtcaaggcaat |
31727433 |
T |
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| Q |
206 |
agatttctagctccagatgatgatg |
230 |
Q |
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| T |
31727434 |
agatttctagctccagatgatgatg |
31727458 |
T |
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