View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21550_high_4 (Length: 506)
Name: NF21550_high_4
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21550_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 34473368 - 34472879
Alignment:
| Q |
1 |
ttcttctataattcagttcatatctctctttttcttcttttaattcatcaaaaagtagtgtcccacacaatcagacacnnnnnnnnagaaatcaaatatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34473368 |
ttcttctataattcagttcatatctctctttttcttcttttaattcatcaaaaagtagtgtcccacacaatcagacacttttttttagaaatcaaatatc |
34473269 |
T |
|
| Q |
101 |
ttcgtaacataaagataatcgagcttaaatcttatgtgattcaaataaagaggtttaaagttcgaatttaaacttgaaatcttaattaagttagagaata |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34473268 |
ttcgtaacataaagataatcgagcttaaatcttatgtgattcaaataaagaggtttaaagttcgaatttaaacttgaaatcttaattaagttagagaata |
34473169 |
T |
|
| Q |
201 |
ctcggatctaggcgcttttagatttttggtttaattttacattgacnnnnnnnnnntgcaggggttttactttatcataaatttaactattgatatatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473168 |
ctcggatctaggcgcttttagatttttggtttaattttacattgacaaaaaaaaaatgcaggggttttactttatcataaatttaactattgatatatct |
34473069 |
T |
|
| Q |
301 |
cgagttagtaactttaatttattgttaaatgagaatgatgattagtttttagaatttcacaatcaattggcattgaaggagtaacctagttgttttggtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473068 |
cgagttagtaactttaatttattgttaaatgagaatgatgattagtttttagaatttcacaatcaattggcattgaaggagtaacctagttgttttggtt |
34472969 |
T |
|
| Q |
401 |
gagagtgagctagtggtctagttctgtccgggagtagatcccctacaatgattggagattcggtagaatctcagccactcatttgatttt |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34472968 |
gagagtgagctagtggtctagttctgtccgggagtagatcccctacaatgattggagattcggtagaatctcagccactcatttgatttt |
34472879 |
T |
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