View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21550_high_8 (Length: 362)
Name: NF21550_high_8
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21550_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 33341414 - 33341070
Alignment:
| Q |
1 |
aggaggaatattaagatcaggaacagaaccagtaaacatgttctgttccaaaaacaatgtatccaaacgagtaagattattaaaatgttgagaaatttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33341414 |
aggaggaatattaagatcaggaacagaaccagtaaacatgttctgttccaaaaacaatgtatccaaacgagtaagattattaaaatgttgagaaatttca |
33341315 |
T |
|
| Q |
101 |
ccgctgaaattgtttttacctaaattcaacctcaccaaattctgcaaaccgtataaaaactccggcacctcaccggagaaaaagttactatgaagataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33341314 |
ccgctgaaattgtttttacctaaattcaacctcaccaaattctgcaaaccatataaaaactccggcacctcaccggagaaaaagttactatgaagataaa |
33341215 |
T |
|
| Q |
201 |
gattcctaagtgaaaccagttttgcaaaatccatgggaattggtcctgttaacgcgttataccggagagaaagtgtctgcaattcagtgagattacctat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33341214 |
gattcctaagtgaaaccagttttgcaaaatccatgggaattggtcctgttaacgcgttataccggagagaaagcgtctgcaattcagtgagattacctat |
33341115 |
T |
|
| Q |
301 |
acctgaaggaaggttaccggagagacccatcgccggtaacctcaa |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33341114 |
acctgaaggaaggttaccggagagacccatcgccggtaacctcaa |
33341070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University