View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21550_low_10 (Length: 351)
Name: NF21550_low_10
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21550_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 23530935 - 23530585
Alignment:
| Q |
1 |
cgattgagccattacttctttcactatctgatggaaacgaagaatctaatcgcaaatcatcttgttgcatatgctcaggaccactgaactcaaaagttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23530935 |
cgattgagccattacttctttcactatctgatggaaacgaagaatctaatcgcaaatcatcttgttgcatatgctcaggaacactgaactcaaaagttct |
23530836 |
T |
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| Q |
101 |
atccatgactaagaaatttctgctttcactatccaatggaaatgaatattccaactgtgcttcagcttgctccttatgattctcagcattttcactttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23530835 |
atccatgactaagaaatttctgctttcactatccaatggaaatgaatattccaactgtgcttcagcttgctccttatgattctcagcattttcactttgt |
23530736 |
T |
|
| Q |
201 |
atattaaattcagtctcactaacatctaatgctgattgtagcttctctttcagcaacttttcttgaactacacttccatttttagatccnnnnnnnnnnn |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23530735 |
atattatattcagtctcactaacatctaatgctgattgtagcttctctttcagcaacttttcttgaactacactttcatttttagatccttttttctttt |
23530636 |
T |
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| Q |
301 |
ncaatgtgacaagaaacaaagtggatacaagagcaattggtattgcaagaa |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23530635 |
tcaatgtgacaagaaacaaagtggatacaagagcaattggtattgcaagaa |
23530585 |
T |
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