View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21550_low_13 (Length: 300)

Name: NF21550_low_13
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21550_low_13
NF21550_low_13
[»] chr4 (11 HSPs)
chr4 (4-266)||(31161570-31161832)
chr4 (3-257)||(31150285-31150539)
chr4 (34-144)||(31476882-31476992)
chr4 (78-240)||(31019754-31019916)
chr4 (78-144)||(31029731-31029797)
chr4 (78-144)||(31159299-31159365)
chr4 (78-240)||(31489630-31489792)
chr4 (19-144)||(31528459-31528584)
chr4 (2-74)||(31034102-31034174)
chr4 (28-144)||(31496829-31496945)
chr4 (65-144)||(31502035-31502114)
[»] scaffold1749 (1 HSPs)
scaffold1749 (34-144)||(61-171)
[»] scaffold0428 (1 HSPs)
scaffold0428 (34-144)||(8822-8932)
[»] chr2 (1 HSPs)
chr2 (34-144)||(17438736-17438846)
[»] chr6 (5 HSPs)
chr6 (34-144)||(31560717-31560827)
chr6 (34-144)||(33306548-33306658)
chr6 (34-144)||(31567036-31567146)
chr6 (34-144)||(33412015-33412125)
chr6 (34-144)||(33642510-33642620)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 266
Target Start/End: Complemental strand, 31161832 - 31161570
Alignment:
Q  4 tgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31161832 tgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgt 31161733  T
Q  104 gtgggttgtaggagtttgtgggatgggtggaatagggaagaaagctatcgctactgcattatacaacaaaatctttcatcaatttcctgtgctcttcctt 203  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31161732 gcgggttgtaggagtttgtgggatgggtggaatagggaagaaagctatcgctactgcattatacaacaaaatctttcatcaatttcctgtgctcttcctt 31161633  T
Q  204 attgatgatctaagaaaaatttataggcatgatggtccgatcagtgctcaaaagtaaactcta 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31161632 attgatgatctaagaaaaatttataggcatgatggtccgatcagtgctcaaaagtaaactcta 31161570  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 3 - 257
Target Start/End: Complemental strand, 31150539 - 31150285
Alignment:
Q  3 ttgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatg 102  Q
    ||||||||||||| | | | |||||||||  ||||||  |||||| |||||| |  | | |||||||||||||||||||||||||| ||| |||||||||    
T  31150539 ttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatg 31150440  T
Q  103 tgtgggttgtaggagtttgtgggatgggtggaatagggaagaaagctatcgctactgcattatacaacaaaatctttcatcaatttcctgtgctcttcct 202  Q
    |  | ||||||||| ||||||||||||||||| ||||||||| | |  | ||||||    ||||||||||||||| |||||||||||||||| ||| |||    
T  31150439 tccgtgttgtaggaatttgtgggatgggtggagtagggaagacaacccttgctactattctatacaacaaaatctctcatcaatttcctgtgttctgcct 31150340  T
Q  203 tattgatgatctaagaaaaatttataggcatgatggtccgatcagtgctcaaaag 257  Q
    ||||||||||||||| |||||||||||| |||||||||  ||  |||||||||||    
T  31150339 tattgatgatctaagcaaaatttatagggatgatggtctaattggtgctcaaaag 31150285  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 31476882 - 31476992
Alignment:
Q  34 atttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtgg 133  Q
    |||||| |||||||||||||| || | ||||||||||||| | |||||||||||| || |||||||||||    ||||||||| ||||||||||||||||    
T  31476882 atttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgttcatgttgtaggaatttgtgggatgggtgg 31476981  T
Q  134 aatagggaaga 144  Q
    |||||||||||    
T  31476982 aatagggaaga 31476992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 31019916 - 31019754
Alignment:
Q  78 ttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtggaatagggaagaaagctatcgctactgcattatacaacaaaatct 177  Q
    ||||||||||| ||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| | || | |||||||| |||||     ||||||    
T  31019916 ttacttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggctactgctttatatggtcaaatct 31019817  T
Q  178 ttcatcaatttcctgtgctcttccttattgatgatctaagaaaaatttataggcatgatggtc 240  Q
     ||||||||||  ||  |  |   |||||||||||||||| ||||| ||||| ||||||||||    
T  31019816 ctcatcaatttgatgcacgttgttttattgatgatctaagcaaaatatatagacatgatggtc 31019754  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 31029797 - 31029731
Alignment:
Q  78 ttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtggaatagggaaga 144  Q
    ||||||||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  31029797 ttacttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaaga 31029731  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 31159365 - 31159299
Alignment:
Q  78 ttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtggaatagggaaga 144  Q
    ||||||||||| || |||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  31159365 ttacttttggactccgttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaaga 31159299  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 31489630 - 31489792
Alignment:
Q  78 ttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtggaatagggaagaaagctatcgctactgcattatacaacaaaatct 177  Q
    ||||||||||| ||  ||||||||||  ||||||||||| ||||||||||||||||||||||||||| | || | |||||||| |||||     ||||||    
T  31489630 ttacttttggactccattgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggctactgctttatatggtcaaatct 31489729  T
Q  178 ttcatcaatttcctgtgctcttccttattgatgatctaagaaaaatttataggcatgatggtc 240  Q
     ||||||||||  ||  |  |   |||||||||||||||| ||||| ||||| ||||||||||    
T  31489730 ctcatcaatttgatgcacgttgttttattgatgatctaagcaaaatatatagacatgatggtc 31489792  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 31528584 - 31528459
Alignment:
Q  19 caagtcttccaaattatttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagt 118  Q
    |||| ||||||||| |||||| ||||| | ||||||| | ||||  ||| ||||| | |||||||||||||  ||||||||||||  || |||| ||| |    
T  31528584 caagccttccaaatgatttagttgggacgcattctctcatagaaagattggaaaagcttttacttttggatgtggttgatgatgttaggattgttggaat 31528485  T
Q  119 ttgtgggatgggtggaatagggaaga 144  Q
    || ||||||||||||| |||||||||    
T  31528484 ttctgggatgggtggagtagggaaga 31528459  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 31034174 - 31034102
Alignment:
Q  2 attgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaattagaaaaa 74  Q
    ||||||||||  || | |||||||||||||  |||||| |||||| |||||||||| ||||||||||||||||    
T  31034174 attgggttaccggttttcaagtcttccaaaagatttagttgggattgattctcttatagaagaattagaaaaa 31034102  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 31496829 - 31496945
Alignment:
Q  28 caaattatttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggat 127  Q
    ||||| |||||| ||||||||| |||| ||   || |||||||||| | |||||||||||| |||||| ||||||   | ||  ||||| ||||||||||    
T  31496829 caaatgatttagttgggatggactctcatatgcaaaaattagaaaagcttttacttttggactcggttaatgatggtcgtgtcataggaatttgtgggat 31496928  T
Q  128 gggtggaatagggaaga 144  Q
    ||| |||||||||||||    
T  31496929 gggaggaatagggaaga 31496945  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 31502035 - 31502114
Alignment:
Q  65 attagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtggaatagggaaga 144  Q
    ||||||||||| |||||| ||||| || |||||||||||    | ||||||| | |||||||||||||||||||||||||    
T  31502035 attagaaaaacttttactcttggactctgttgatgatgttcaagctgtaggaatctgtgggatgggtggaatagggaaga 31502114  T

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Target: scaffold1749 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 171 - 61
Alignment:
Q  34 atttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtgg 133  Q
    |||||| ||||||  |||||| |||||||| |||| || | || ||||||||| |||||||||||| |||  | ||| ||||| |||| |||||||| ||    
T  171 atttagttgggataaattctcgtacagaagcattaaaacatcagttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggagg 72  T
Q  134 aatagggaaga 144  Q
    |||||||||||    
T  71 aatagggaaga 61  T

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Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 8932 - 8822
Alignment:
Q  34 atttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtgg 133  Q
    |||||| ||||||  |||||| |||||||| |||| || | || ||||||||| |||||||||||| |||  | ||| ||||| |||| |||||||| ||    
T  8932 atttagttgggataaattctcgtacagaagcattaaaacatcagttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggagg 8833  T
Q  134 aatagggaaga 144  Q
    |||||||||||    
T  8832 aatagggaaga 8822  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 17438736 - 17438846
Alignment:
Q  34 atttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtgg 133  Q
    |||||| ||||||  |||||| || ||||| |||| |||| |||||||||||||| |||||||||| |||  | | | ||||| |||| |||||||| ||    
T  17438736 atttagttgggataaattctcgtatagaagcattaaaaaatcatttacttttggactcggttgatggtgttcgtgctataggaatttgggggatgggagg 17438835  T
Q  134 aatagggaaga 144  Q
    |||||||||||    
T  17438836 aatagggaaga 17438846  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 31560717 - 31560827
Alignment:
Q  34 atttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtgg 133  Q
    |||||| ||||||  |||||| || ||||| |||| |||| ||||| |||||||| |||| ||||| |||  | ||| ||||| ||||||| ||||| ||    
T  31560717 atttagttgggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgttcgtgttataggaatttgtggaatgggagg 31560816  T
Q  134 aatagggaaga 144  Q
    |||||||||||    
T  31560817 aatagggaaga 31560827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 33306658 - 33306548
Alignment:
Q  34 atttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtgg 133  Q
    |||||| |||||| ||||||| || ||||| |||| |||| ||||| |||||||| |||||||||  ||| || | | ||||| ||| ||| ||||| ||    
T  33306658 atttagttgggattgattctcctatagaagcattaaaaaatcatttgcttttggactcggttgattgtgtttgtgctataggaatttctggaatgggagg 33306559  T
Q  134 aatagggaaga 144  Q
    |||||||||||    
T  33306558 aatagggaaga 33306548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 31567036 - 31567146
Alignment:
Q  34 atttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtgg 133  Q
    |||||| |||||| ||||||| || |||||  ||| |||| ||||| |||||||| ||| |||||| |||  | | | ||||| ||||||| ||||| ||    
T  31567036 atttagttgggattgattctcctatagaagcgttacaaaatcatttgcttttggactcgattgatggtgttcgtgctataggaatttgtggaatgggggg 31567135  T
Q  134 aatagggaaga 144  Q
    |||||||||||    
T  31567136 aatagggaaga 31567146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 33412125 - 33412015
Alignment:
Q  34 atttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtgg 133  Q
    |||||| ||||||  ||||||  | ||||| |||| |||| |||||||||||||| |||||||||| ||| || | | | ||| ||||||| ||||| ||    
T  33412125 atttagttgggataaattctcggatagaagtattacaaaatcatttacttttggactcggttgatggtgtttgtgctattggaatttgtggaatgggcgg 33412026  T
Q  134 aatagggaaga 144  Q
    |||||| ||||    
T  33412025 aataggaaaga 33412015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 33642510 - 33642620
Alignment:
Q  34 atttagctgggatggattctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgtgggttgtaggagtttgtgggatgggtgg 133  Q
    |||||| |||||| ||||||| || | ||| |||| |||| ||||| |||||||| || ||||||| |||  | | | ||||| ||||||| ||||| ||    
T  33642510 atttagttgggattgattctcctataaaagcattacaaaatcatttgcttttggactcagttgatggtgttcgtgctataggaatttgtggaatgggagg 33642609  T
Q  134 aatagggaaga 144  Q
    |||||||||||    
T  33642610 aatagggaaga 33642620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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