View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21550_low_14 (Length: 298)

Name: NF21550_low_14
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21550_low_14
NF21550_low_14
[»] chr1 (1 HSPs)
chr1 (18-281)||(1717394-1717657)
[»] chr3 (18 HSPs)
chr3 (18-219)||(19812460-19812661)
chr3 (18-287)||(19849173-19849442)
chr3 (18-171)||(20036385-20036538)
chr3 (17-219)||(19818736-19818938)
chr3 (18-163)||(19956267-19956412)
chr3 (18-171)||(26653332-26653485)
chr3 (24-139)||(30914832-30914947)
chr3 (18-287)||(20015873-20016136)
chr3 (18-171)||(19838576-19838729)
chr3 (18-171)||(26647184-26647337)
chr3 (18-219)||(19951304-19951499)
chr3 (18-219)||(19989705-19989900)
chr3 (99-163)||(19832133-19832197)
chr3 (22-219)||(17114900-17115091)
chr3 (18-141)||(20046303-20046426)
chr3 (109-281)||(19858343-19858509)
chr3 (108-156)||(19943987-19944035)
chr3 (108-156)||(24839774-24839822)
[»] chr5 (2 HSPs)
chr5 (17-287)||(9815216-9815480)
chr5 (18-156)||(26354724-26354862)
[»] chr8 (3 HSPs)
chr8 (18-65)||(22651781-22651828)
chr8 (99-156)||(22689473-22689530)
chr8 (20-65)||(22685596-22685641)
[»] chr4 (1 HSPs)
chr4 (18-138)||(6397554-6397674)
[»] chr7 (1 HSPs)
chr7 (19-78)||(12581573-12581632)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 1717394 - 1717657
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717394 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 1717493  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1717494 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccacgatgaccaaccacggagaccctttttggtttaggtg 1717593  T
Q  218 gcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717594 gcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgat 1717657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 19812460 - 19812661
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| |   |||| ||| ||||||||||||||    
T  19812460 tataaagatttaagtttgtttaagaaaacaattgttgatttgtcaaaatatcctgttggtggtgatagatttcccttggagattactcttcaatcaccct 19812559  T
Q  118 tttacttggttcaaatttgggtgttggga-aggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggt 216  Q
    |||||||||||||||||||||| |||||| |||||||||| ||| ||| |||||| | |||| ||| ||| |||||| || |||||||||| ||||||||    
T  19812560 tttacttggttcaaatttgggt-ttgggagaggttcaaaaatttgcaaccacaacaacaaactatgttgatcaaccatggcgacccttttttgtttaggt 19812658  T
Q  217 ggc 219  Q
    |||    
T  19812659 ggc 19812661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 19849173 - 19849442
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||||||||||||||||||||||   || ||||||||||| || ||||||||| ||||||||| |   |||| ||| |||| |||||||||    
T  19849173 tataaggatttaactttgtttaagaaaacaatcactgatttgtcaaaatgtcatgttggtggtgatagatttcccttggagattactcttaaatcaccct 19849272  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtg 217  Q
    |||| ||||||||||||||||||| ||  |||||||||| ||| ||| |||| | | |||||||| |||||||||| || || ||||| | |||||| ||    
T  19849273 tttatttggttcaaatttgggtgtgggagaggttcaaaaatttgcaaccacagccacaaaccatgttgaccaaccatggggatcctttattgtttagatg 19849372  T
Q  218 gcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgatattctt 287  Q
    || || |  | | | ||||||||||||  ||||||||||| |||||||||| ||||| |||||| |||||    
T  19849373 gcataaggttcaggccttgaaaattgacaatgttaggttggcattagactcggctatggatgattttctt 19849442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 20036538 - 20036385
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||| |||||| || ||   || |||| |||| |||||||||    
T  20036538 tataaggatttaactttgtttaagaaaacaattgttgatttgtcaaaatgtcatgttggtggtgatagacttcctttagaagttactcttgaatcaccct 20036439  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaac 171  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||| ||||||    
T  20036438 tttacttggttcaaatttgggtgtgggagaggttcaaaaatttacaaccacaac 20036385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 19818736 - 19818938
Alignment:
Q  17 ttataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccc 116  Q
    |||||| ||||||| |||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||| ||   ||  ||| |||||||||||||    
T  19818736 ttataaagatttaagtttgtttaagaaaaaaatagttgatttgtcaaaatattctgttggtggtgatagatttcctttagaacttactcttcaatcaccc 19818835  T
Q  117 ttttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggt 216  Q
    ||||| ||||||||||| ||||||| ||  |||||||||| | | ||| |||  | | |||||||| |||  ||||| ||||||||||||| ||||||||    
T  19818836 ttttatttggttcaaatatgggtgtgggagaggttcaaaaatatgcaaccactgccacaaaccatgttgataaaccatggagacccttttttgtttaggt 19818935  T
Q  217 ggc 219  Q
    |||    
T  19818936 ggc 19818938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 19956267 - 19956412
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    |||||||||||||||||||| ||||||| || ||||| |||||||||||||||||| ||||| ||||||| | ||   ||  ||| ||||||||||||||    
T  19956267 tataaggatttaactttgttaaagaaaaaaacagttgatttgtcaaaatatcctgtgggtggtgatagatatccttcagaacttactcttcaatcaccct 19956366  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttaca 163  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||    
T  19956367 tttacttggttcaaatttgggtgtgggaaaggttcaaaaatttaca 19956412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 26653332 - 26653485
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| ||  ||| |||| ||| | ||||||||    
T  26653332 tataaggacttgactttgtttaagaaaacaattgttggtttgtcaaaatattatgttggtggtgatagatttcctttggaagttaatctacgatcaccct 26653431  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaac 171  Q
    |||||||||||||||||||||||| ||  ||||||| || ||| ||| ||||||    
T  26653432 tttacttggttcaaatttgggtgtgggagaggttcacaaatttgcaaccacaac 26653485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 30914832 - 30914947
Alignment:
Q  24 gatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttact 123  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| | ||| |||||||| |||||| ||||||||| |||    
T  30914832 gatttaagtttgtttaagaaaacaatagttggtttgtcaaaatatcaagttggtggtgatagatgtcctatggaggttactcttcactcaccctttgact 30914931  T
Q  124 tggttcaaatttgggt 139  Q
    |||| |||||||||||    
T  30914932 tggtacaaatttgggt 30914947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 20016136 - 20015873
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||| ||||||| |||||||||||||||||| |||| |||||||||||||| ||| ||||| ||||| | | ||   || ||||  ||||||||||||     
T  20016136 tataaagatttaagtttgtttaagaaaacaattgttgatttgtcaaaatatcatgtgggtggtgataggtatcctttagaagttacacttcaatcaccca 20016037  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtg 217  Q
    |||| ||||||||||||||||||| ||  |||||||||| ||||||| ||||||      ||||| ||| ||| || | ||||||||| | |||||||||    
T  20016036 tttatttggttcaaatttgggtgtgggagaggttcaaaattttacaaccacaac------ccatgttgatcaatcatgaagaccctttattgtttaggtg 20015943  T
Q  218 gcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgatattctt 287  Q
    || || |  | | |  |||||||||||  |||||| | || ||||||||||||||||||||||| |||||    
T  20015942 gcataaggttcaggctttgaaaattgacaatgttatggtggcattagactcagctattgatgattttctt 20015873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 19838576 - 19838729
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||| |||||||||||||| ||||||| || ||||| |||||||||| ||||||||||| | |||| || | ||   || |||| ||||||||||||||    
T  19838576 tataatgatttaactttgttaaagaaaaaaacagttgatttgtcaaaacatcctgttggttgtgatacatatcctttagaagttactcttcaatcaccct 19838675  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaac 171  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||| ||||||    
T  19838676 tttacttggttcaaatttgggtgtgggagaggttcaaaaatttacaaccacaac 19838729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 26647184 - 26647337
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||| |||||||||||||||| | |||| ||||  ||||  | ||| |||||| ||||||| | ||  ||| |||| ||||||||||||||    
T  26647184 tataaggatttaagtttgtttaagaaaacacttgttgatttgaaaaaaatttctgatggtggtgatagatatcctttggaagttactcttcaatcaccct 26647283  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaac 171  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||| ||||||    
T  26647284 tttacttggttcaaatttgggtgtgggaaaggttcaaaaatttacaaccacaac 26647337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 19951304 - 19951499
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||||||||||||| ||| |||| |||| |||||||||||||| ||| ||||| ||||||| | ||   ||  ||| ||||||||||||||    
T  19951304 tataaggatttaactttgtttaaaaaagcaattgttgatttgtcaaaatatcatgtgggtggtgatagatatcctttagaacttactcttcaatcaccct 19951403  T
Q  118 tttacttggttcaaatttgggtgttggga-aggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggt 216  Q
    |||||||||||||||||||| | |||||| ||||| |||| ||||||| ||||||      |||||  ||  ||||| ||||||||||||| ||||||||    
T  19951404 tttacttggttcaaatttggat-ttgggagaggtttaaaaatttacaaccacaac------ccatgccgataaaccatggagacccttttttgtttaggt 19951496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 19989705 - 19989900
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||  |||  ||||||| | | |||||  ||||||||||  |||||||||||| |||||| || | | ||||| || ||||||||||||||    
T  19989705 tataaggatttaggtttacttaagaacatattagttaatttgtcaaaacttcctgttggtggtgatagacttcccatggaggctattcttcaatcaccct 19989804  T
Q  118 tttacttggttcaaatttgggtgttggga-aggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggt 216  Q
    |||||||||||||| ||||||| |||||| |||||||||| ||||||| ||||||      ||||| ||| |||| | | ||||||||||| ||||||||    
T  19989805 tttacttggttcaagtttgggt-ttgggagaggttcaaaaatttacaaccacaac------ccatgctgatcaactatgaagacccttttttgtttaggt 19989897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 19832133 - 19832197
Alignment:
Q  99 gttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaagtttaca 163  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  19832133 gttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaaatttaca 19832197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 17114900 - 17115091
Alignment:
Q  22 aggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccctttta 121  Q
    ||||||| ||||||||||||||||| ||  ||| |||||||||| ||||||||  ||| ||||||||| ||   || |||  || || |   ||||||||    
T  17114900 aggatttgactttgtttaagaaaactattattgatttgtcaaaaaatcctgtttatggtgatagatttcctttagaagttgctcgtcgaatgccctttta 17114999  T
Q  122 cttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggc 219  Q
    |||||||||||||||| ||| ||  |||||||||| ||||||| |||      || ||||| ||| |||||| ||||||||||| | |||||||||||    
T  17115000 cttggttcaaatttggatgtgggagaggttcaaaaatttacaaccac------aatccatgttgatcaaccatggagaccctttattgtttaggtggc 17115091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 20046303 - 20046426
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||| ||| |||||||| |||||  ||| | ||| ||||||||| |||||||| ||||||||| ||   ||  ||| | ||| ||||||||    
T  20046303 tataaggatttaagtttatttaagaacacaattattgatctgttaaaatatccggttggtggtgatagatttcctgttgaatttactattctatcaccct 20046402  T
Q  118 tttacttggttcaaatttgggtgt 141  Q
    |||| ||||||||| |||||||||    
T  20046403 tttatttggttcaagtttgggtgt 20046426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 281
Target Start/End: Original strand, 19858343 - 19858509
Alignment:
Q  109 aatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttg 208  Q
    ||||||||||||||||| ||||| ||||||| | || ||||||||||| |||| |  ||||||      ||||| ||| ||| || ||||| ||||| |     
T  19858343 aatcacccttttacttgcttcaagtttgggtttgggaaaggttcaaaaatttagagccacaac------ccatgttgatcaagcatggagaacctttatt 19858436  T
Q  209 gtttaggtggcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgat 281  Q
    ||||||||||| || |  ||| | ||||||| ||||  |||||| |||| |||||||||| ||||||||||||    
T  19858437 gtttaggtggcataaggttaaggccttgaaagttgacaatgttaagttggcattagactcggctattgatgat 19858509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 19943987 - 19944035
Alignment:
Q  108 caatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 156  Q
    ||||||||||||||| |||||||| ||||||| | || |||||||||||    
T  19943987 caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaa 19944035  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 24839822 - 24839774
Alignment:
Q  108 caatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 156  Q
    ||||||||||||||| |||||||| ||||||| | || |||||||||||    
T  24839822 caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaa 24839774  T

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Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 9815216 - 9815480
Alignment:
Q  17 ttataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccc 116  Q
    |||||| ||||||| ||||||||||||||||||||||  |||||||||||   |||||||||| ||||||| | ||   || |||| |||||||||||||    
T  9815216 ttataacgatttaagtttgtttaagaaaacaatagttaatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccc 9815315  T
Q  117 ttttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggt 216  Q
    ||||||||||||||||||||||||| ||  |||||| ||| ||||||  || |||      ||||| ||| ||| |||||||||||||| | ||||||||    
T  9815316 ttttacttggttcaaatttgggtgtgggagaggttccaaaatttacagccagaac------ccatgttgatcaatcacggagaccctttattgtttaggt 9815409  T
Q  217 ggcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgatattctt 287  Q
    | | || |  | | | ||||||||||||  |||||| | || |||||||||| ||||| |||||| |||||    
T  9815410 gacataaggttcaggccttgaaaattgacaatgttaagctggcattagactcggctatggatgattttctt 9815480  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 26354862 - 26354724
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    |||||||||||||   ||||||||||||| || |||| |||||||||||   |||||||||| ||||||| | ||   || |||| |||||||||||| |    
T  26354862 tataaggatttaagcgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgt 26354763  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaa 156  Q
    |||||||||||||||||||||||| ||  ||||||||||    
T  26354762 tttacttggttcaaatttgggtgtgggagaggttcaaaa 26354724  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 22651828 - 22651781
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaa 65  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  22651828 tataaggatttaactttgtttaagaaaacaattgttgatttgtcaaaa 22651781  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 22689530 - 22689473
Alignment:
Q  99 gttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 156  Q
    |||| ||| |||||||||||||||||||||||| ||||||||| ||  ||||||||||    
T  22689530 gttaatctgcaatcacccttttacttggttcaagtttgggtgtgggagaggttcaaaa 22689473  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 22685641 - 22685596
Alignment:
Q  20 taaggatttaactttgtttaagaaaacaatagttggtttgtcaaaa 65  Q
    ||||||||||| ||| |||||||||||||| |||| ||||||||||    
T  22685641 taaggatttaagtttttttaagaaaacaattgttgatttgtcaaaa 22685596  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 6397674 - 6397554
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    |||||||||||| |||| ||||||||||||||  ||| |||||| ||||||| ||||||||  |||| ||||  |   ||  ||| ||||| |||||| |    
T  6397674 tataaggatttatctttatttaagaaaacaattattgatttgtcgaaatatcttgttggtgatgataaatttcatgttgaatttactcttctatcacctt 6397575  T
Q  118 tttacttggttcaaatttggg 138  Q
    |||||||||||||| ||||||    
T  6397574 tttacttggttcaagtttggg 6397554  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 12581573 - 12581632
Alignment:
Q  19 ataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtg 78  Q
    |||||||||||||||| ||||||||||||||  ||| | |||||||||||| ||||||||    
T  12581573 ataaggatttaactttatttaagaaaacaattattgatctgtcaaaatatcttgttggtg 12581632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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