View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21550_low_15 (Length: 289)
Name: NF21550_low_15
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21550_low_15 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 894464 - 894722
Alignment:
| Q |
16 |
cataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894464 |
cataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggt |
894563 |
T |
|
| Q |
116 |
gcccatgatggaacaaccaatccattttctttggttctttccagaaaatcacttggtaaataatctaatggatcatctttttctccaacaaaataagcag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894564 |
gcccatgatggaacaaccaatccattttctttggttctttccagaaaaccacttggtaaataatctaatggatcatctttttctccaacaaaataagcag |
894663 |
T |
|
| Q |
216 |
agctaacaactttacttggaactctaacaacccacaagaatttcttactactcaattct |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
894664 |
agctaacaactttacttggaactctaacaacccacaagaatttcttaccactcaattct |
894722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 906176 - 905921
Alignment:
| Q |
19 |
aggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcc |
118 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
906176 |
aggcaccccattaaccacagtctccaaagttgaaccccaaccacaatgactcaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcc |
906077 |
T |
|
| Q |
119 |
catgatggaacaaccaatccattttctttggttctttccagaaaatcacttggtaaataatctaatggatcatctttttctccaacaaaataagcagagc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||| || |||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
906076 |
catgatggaacaaccaatccattttctttgtttctttccaagaaaccatttggtaaatactctaatggatcatcttttgctccaacaaaataagcagagt |
905977 |
T |
|
| Q |
219 |
taacaactttacttggaactctaacaacccacaagaatttcttactactcaattct |
274 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
905976 |
taacatctttacttggaactctaacaacccacaagaactttttaccactcaattct |
905921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 23423892 - 23423711
Alignment:
| Q |
16 |
cataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggt |
115 |
Q |
| |
|
|||||||||||||| ||| | || ||| ||| |||||| ||||||||||||| |||||||||||||| |||| | ||||| |||||| ||||||||||| |
|
|
| T |
23423892 |
cataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtgga |
23423793 |
T |
|
| Q |
116 |
gcccatgatggaacaaccaatccattttctttggttctttccagaaaatcacttggtaaataatctaatggatcatcttttt |
197 |
Q |
| |
|
|||||||||||||| ||||| || | ||||| || ||||||| ||| | ||||||||||| |||||||||||| |||| |
|
|
| T |
23423792 |
gcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatcctttt |
23423711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 548712 - 548888
Alignment:
| Q |
16 |
cataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggt |
115 |
Q |
| |
|
|||||||||||||| ||| | || ||| ||| |||||| ||||||||||||| |||||||||||||| |||| | ||||| |||||| ||||||||||| |
|
|
| T |
548712 |
cataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtgga |
548811 |
T |
|
| Q |
116 |
gcccatgatggaacaaccaatccattttctttggttctttccagaaaatcacttggtaaataatctaatggatcatc |
192 |
Q |
| |
|
|||||||||||||| ||||| || | ||||| || ||||||| ||| | ||||||||||| |||||||||||| |
|
|
| T |
548812 |
gcccatgatggaaccaccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatc |
548888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 2437007 - 2436893
Alignment:
| Q |
20 |
ggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgccc |
119 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| ||| ||||| |||||||| |||||||||| ||||| |||| ||| || | ||| |||||||||| |
|
|
| T |
2437007 |
ggcacaccatgcaccacactctcaagggttgaattccagccacagtgactcaagaaaccaccaactgatctgtgactaaggatttgaacctgtggtgccc |
2436908 |
T |
|
| Q |
120 |
atgatggaacaacca |
134 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
2436907 |
atgatggaataacca |
2436893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 10201868 - 10201936
Alignment:
| Q |
19 |
aggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattga |
87 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||| ||||||||||||||||| ||| || |||||||| |
|
|
| T |
10201868 |
aggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaaccctccaattga |
10201936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 10208941 - 10209009
Alignment:
| Q |
19 |
aggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattga |
87 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||| ||||||||||||||||| ||| || |||||||| |
|
|
| T |
10208941 |
aggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaaccctccaattga |
10209009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 1963595 - 1963481
Alignment:
| Q |
20 |
ggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgccc |
119 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| ||||||||||||| |||||| |||||||| || | |||| ||| || | || |||||||||| |
|
|
| T |
1963595 |
ggcacaccatacaccacactctcaagggttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatttgaatctgtggtgccc |
1963496 |
T |
|
| Q |
120 |
atgatggaacaacca |
134 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1963495 |
atgatggaacaacca |
1963481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 566313 - 566377
Alignment:
| Q |
57 |
aaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccat |
121 |
Q |
| |
|
||||| |||||| ||||| ||| ||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
566313 |
aaccaaaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
566377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 8294420 - 8294674
Alignment:
| Q |
20 |
ggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgccc |
119 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294420 |
ggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgccc |
8294519 |
T |
|
| Q |
120 |
atgatggaacaaccaatccattttctttggttctttccagaaaatcacttggtaaataatctaatggatcatctttttctccaacaaaataagcagagct |
219 |
Q |
| |
|
|||||| ||| || | |||||||||||| |||||||||| |||| || |||||||||| ||||||||||||| |||| |||| |||||| ||||| || |
|
|
| T |
8294520 |
atgatgcaactactagtccattttcttttgttctttccaaaaaaccatttggtaaatactctaatggatcattgttttgtccactaaaataggcagaact |
8294619 |
T |
|
| Q |
220 |
aacaactttacttggaactctaacaacccacaagaatttcttactactcaattct |
274 |
Q |
| |
|
| | |||||||||| |||| ||||||||||||||||| | || |||||||||| |
|
|
| T |
8294620 |
agaatttttacttggagctctcacaacccacaagaatttgtgaccactcaattct |
8294674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 29 - 274
Target Start/End: Complemental strand, 33257326 - 33257081
Alignment:
| Q |
29 |
ttaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaa |
128 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33257326 |
ttaaccacactctccaaagttgaactccaaccacaatgacttaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgtaa |
33257227 |
T |
|
| Q |
129 |
caaccaatccattttctttggttctttccagaaaatcacttggtaaataatctaatggatcatctttttctccaacaaaataagcagagctaacaacttt |
228 |
Q |
| |
|
|||| ||||| || ||||| |||||||| | |||| | |||||||||| |||||||| |||| |||| |||| |||||||||||| ||| | ||| |
|
|
| T |
33257226 |
caactaatcccttctcttttgttctttcgacaaaaccgtttggtaaatactctaatggttcattgttttgtccattaaaataagcagaactagaatgttt |
33257127 |
T |
|
| Q |
229 |
acttggaactctaacaacccacaagaatttcttactactcaattct |
274 |
Q |
| |
|
||||||| |||| |||||||||||||| || | || |||||||||| |
|
|
| T |
33257126 |
acttggagctctcacaacccacaagaacttgtgaccactcaattct |
33257081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 175
Target Start/End: Original strand, 845027 - 845147
Alignment:
| Q |
55 |
ccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttggttctt |
154 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||| | |||||||||||| |||| |||||||||||| ||||||| || || || || |||| |||||| |
|
|
| T |
845027 |
ccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtggtgcccaatatggaactactaaacctttcccttttgttctt |
845126 |
T |
|
| Q |
155 |
tccagaaaatcacttggtaaa |
175 |
Q |
| |
|
|||| |||| || |||||||| |
|
|
| T |
845127 |
tccaaaaaaccatttggtaaa |
845147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 870311 - 870385
Alignment:
| Q |
55 |
ccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaac |
129 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||| | |||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
870311 |
ccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtggtgcccaatatggaac |
870385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 29 - 274
Target Start/End: Complemental strand, 1444 - 1199
Alignment:
| Q |
29 |
ttaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaa |
128 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1444 |
ttaaccacactctccaaagttgaactccaaccacaatgacttaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgtaa |
1345 |
T |
|
| Q |
129 |
caaccaatccattttctttggttctttccagaaaatcacttggtaaataatctaatggatcatctttttctccaacaaaataagcagagctaacaacttt |
228 |
Q |
| |
|
|||| ||||| || ||||| |||||||| | |||| | |||||||||| |||||||| |||| |||| |||| |||||||||||| ||| | ||| |
|
|
| T |
1344 |
caactaatcccttctcttttgttctttcgacaaaaccgtttggtaaatactctaatggttcattgttttgtccattaaaataagcagaactagaatgttt |
1245 |
T |
|
| Q |
229 |
acttggaactctaacaacccacaagaatttcttactactcaattct |
274 |
Q |
| |
|
||||||| |||| |||||||||||||| || | || |||||||||| |
|
|
| T |
1244 |
acttggagctctcacaacccacaagaacttgtgaccactcaattct |
1199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 15188 - 15309
Alignment:
| Q |
37 |
actctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaat |
136 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| ||||| ||||||| ||| | ||| ||| || |||||||| ||||||||||||| | || || |
|
|
| T |
15188 |
actctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatgccaaaataaaa |
15287 |
T |
|
| Q |
137 |
ccattttctttggttctttcca |
158 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
15288 |
cctttttctttggttctttcca |
15309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 57656 - 57535
Alignment:
| Q |
37 |
actctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaat |
136 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| ||||| ||||||| ||| | ||| ||| || |||||||| ||||||||||||| | || || |
|
|
| T |
57656 |
actctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatgccaaaataaaa |
57557 |
T |
|
| Q |
137 |
ccattttctttggttctttcca |
158 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
57556 |
cctttttctttggttctttcca |
57535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 22298 - 22246
Alignment:
| Q |
106 |
aacttgtggtgcccatgatggaacaaccaatccattttctttggttctttcca |
158 |
Q |
| |
|
||||||||||||||||||||| | || ||| || |||||||| |||||||||| |
|
|
| T |
22298 |
aacttgtggtgcccatgatggtaaaatcaaacctttttcttttgttctttcca |
22246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 13653300 - 13653230
Alignment:
| Q |
16 |
cataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattg |
86 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| ||| |||| ||| |||||||| ||||||||| |
|
|
| T |
13653300 |
cataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaagcaccaattg |
13653230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 5906227 - 5906141
Alignment:
| Q |
48 |
ttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaacca |
134 |
Q |
| |
|
|||||| |||||||||||||||||| || ||||||| |||| |||| ||| || |||| || |||||||||||||||| ||||| |
|
|
| T |
5906227 |
ttgaactccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataacca |
5906141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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