View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21550_low_16 (Length: 289)

Name: NF21550_low_16
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21550_low_16
NF21550_low_16
[»] chr2 (4 HSPs)
chr2 (18-277)||(31330512-31330771)
chr2 (18-277)||(31337233-31337492)
chr2 (18-214)||(2694672-2694855)
chr2 (191-268)||(31316273-31316352)
[»] chr4 (1 HSPs)
chr4 (157-277)||(31662636-31662756)
[»] chr8 (3 HSPs)
chr8 (18-214)||(5559115-5559297)
chr8 (136-253)||(34149980-34150098)
chr8 (18-114)||(25637223-25637319)
[»] chr5 (2 HSPs)
chr5 (18-214)||(37367646-37367829)
chr5 (18-214)||(41529744-41529926)
[»] chr3 (2 HSPs)
chr3 (18-214)||(19357899-19358081)
chr3 (183-268)||(18112715-18112802)
[»] chr7 (2 HSPs)
chr7 (18-138)||(4342607-4342727)
chr7 (173-214)||(34455281-34455322)
[»] chr6 (1 HSPs)
chr6 (146-253)||(5248687-5248795)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 31330771 - 31330512
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330771 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaataacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 31330672  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctctt 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330671 acttttacctcaatttaagctattaatcacttatacttacattcagtttcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctctt 31330572  T
Q  218 ggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttca 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330571 ggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttca 31330512  T

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Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 31337492 - 31337233
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337492 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaataacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 31337393  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctctt 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337392 acttttacctcaatttaagctattaatcacttatacttacattcagtttcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctctt 31337293  T
Q  218 ggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttca 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337292 ggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttca 31337233  T

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Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 2694855 - 2694672
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    |||||||||||||||||||||| ||| |||||| |||||   | | ||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  2694855 actaacagcccaaaaacagagttatcgcagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttcttctcaaaataatc 2694756  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||||||||||||    
T  2694755 acttttacctcaatttaagctattaatcacttatacttacat-------------tcagcccctgcctcaatcttcttgccaagccaaaccctagct 2694672  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 31316273 - 31316352
Alignment:
Q  191 ttcttgccaagccaaa-ccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaaca 268  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||  |||||||| ||||||    
T  31316273 ttcttgccaagccaaaaccctagctcttg-tgtcttgcattaatcttgctcaaacttgcctctaatgctcaaaacacaaca 31316352  T

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Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 31662756 - 31662636
Alignment:
Q  157 cattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagct 256  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31662756 cattcagtttcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagct 31662657  T
Q  257 caaaatacaacacaaacttca 277  Q
    |||||||||||||||||||||    
T  31662656 caaaatacaacacaaacttca 31662636  T

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Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 5559115 - 5559297
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    ||||||||||||||||||||||||| | ||||| |||||   | | ||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  5559115 actaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttcttctcaaaataatc 5559213  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||| ||||||||||||||||||||||||||||||||             |||||||||||||||||| |||||||||||||||||||||||||||    
T  5559214 acttttacctcaatttaagctattaatcacttatactt-------------acattcagcccctgcctcaatcttcttgccaagccaaaccctagct 5559297  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 34150098 - 34149980
Alignment:
Q  136 gctattaatcacttatacttaca-ttcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatc 234  Q
    |||||| |||||||||||||||| |||| || ||| | ||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  34150098 gctatttatcacttatacttacacttcaatttcaatactcatcccttgactcaatcttcttgccaagccaaaccctagctcttggtgtcttgcctcaatc 34149999  T
Q  235 ttgctcaagcttgcctcta 253  Q
    |||||||||||||||||||    
T  34149998 ttgctcaagcttgcctcta 34149980  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 25637319 - 25637223
Alignment:
Q  18 actaacagcccaaaa-acagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaata 114  Q
    ||||| ||||||||| ||||||| ||| |||||| ||||| | ||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  25637319 actaagagcccaaaatacagagttatctcagaat-ccaaaggcaataacagcttatgcttataattaatcaacataacttaaatttcttctcaaaata 25637223  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 37367829 - 37367646
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    |||||||||||||||||||| |||||| ||||| |||||   | | ||| ||||||| |||||| |||||||||||||| |||| |||||||||||||||    
T  37367829 actaacagcccaaaaacagattcatcatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaattgcttctcaaaataatc 37367730  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||||||||||||    
T  37367729 acttttacctcaatttaagctattaatcacttatacttacat-------------tcagcccctgcctcaatcttcttgccaagccaaaccctagct 37367646  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 41529744 - 41529926
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    ||||||||||||||||||||||||| | ||||| |||||   | | ||| ||||||| |||||| |||||||||||||| ||||||||| ||||||||||    
T  41529744 actaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttcttcccaaaataatc 41529842  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||| ||||||||||||||||||||||||||||||||             |||||||||||||||||| |||||||||||||||||||||||||||    
T  41529843 acttttacctcaatttaagctattaatcacttatactt-------------acattcagcccctgcctcaatcttcttgccaagccaaaccctagct 41529926  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 19358081 - 19357899
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    ||||||||||||||||||||||||| | ||||| |||||   | | ||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  19358081 actaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttcttctcaaaataatc 19357983  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||||||||||||    
T  19357982 acttttacctcaatttaagctattaatcacttatacttacat-------------tcagcccctgcctcaatcttcttgccaagccaaaccctagct 19357899  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 18112715 - 18112802
Alignment:
Q  183 cctctatcttcttgccaagccaaa-ccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaaca 268  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||  |||||||| ||||||    
T  18112715 cctcaatcttcttgccaagccaaaaccctagctcttg-tgtcttgcattaatcttgctcaaacttgcctctaatgctcaaaacacaaca 18112802  T

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Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 4342607 - 4342727
Alignment:
Q  18 actaacagcccaaaa-acagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataat 116  Q
    ||||||||||||||| ||||||| ||| |||||| ||||| | ||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||||     
T  4342607 actaacagcccaaaatacagagttatctcagaat-ccaaaggcaataacagcttatgcttataattaatcaacataacttaaatttcttctcaaaataag 4342705  T
Q  117 cactttcacctcaatttaagct 138  Q
    |||||| |||||||||| ||||    
T  4342706 cacttttacctcaattttagct 4342727  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 34455322 - 34455281
Alignment:
Q  173 tcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||||| ||| || |||||||||||||||||||||||||||    
T  34455322 tcagcccttgcttcaatcttcttgccaagccaaaccctagct 34455281  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 5248795 - 5248687
Alignment:
Q  146 acttatacttaca-ttcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagc 244  Q
    ||||||||||||| |||| || ||| | ||||||| || ||| || || |||||||||||||||||| |||||||||||||| || ||||||||| ||||    
T  5248795 acttatacttacacttcaatttcaatactcagcccttgtctcgattttattgccaagccaaaccctatctcttggtgtcttgactcaatcttgctaaagc 5248696  T
Q  245 ttgcctcta 253  Q
    |||||||||    
T  5248695 ttgcctcta 5248687  T

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