View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21550_low_2 (Length: 529)
Name: NF21550_low_2
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21550_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 10864760 - 10865257
Alignment:
| Q |
18 |
tgtatatcgtttgaatgcacagggatggagcagatgtgagaggatactttgcatggtcattactggacaacttcgaatgggctcaaggttataccaaacg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10864760 |
tgtatatcgtttgaatgcacagggatggagcagatgtgagaggatactttgcatggtcattactggacaacttcgaatgggctcaaggttataccaaacg |
10864859 |
T |
|
| Q |
118 |
cttcggattggtctatgtagattacaaaaatggactcactaggcacccaaagtcttctgcatattggttttcgcggtttctgaaagatgggacaaacaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10864860 |
cttcggattggtctatgtagattacaaaaatggactcactaggcacccaaagtcttctgcatattggttttcacggtttctgaaagatgggacaaacaag |
10864959 |
T |
|
| Q |
218 |
aagggtaaagaagagtagttcacgttcctcattatgtgttttacacggaagaaaataatatcagaacaagaacttctgtcattgtttggatgttttgtga |
317 |
Q |
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| T |
10864960 |
aagggtaaagaagagtagttcactttcatcatt--gtgtcttacaaggaagaaaataataccaggacaagaacttctgtcattgtttggatgttttgtga |
10865057 |
T |
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| Q |
318 |
aaactatagtggacgtctcgagttatttaccactgcatcaaatcttatgccttaacctatattatttacatttgtcttagcttctaatctgcttccatct |
417 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10865058 |
aaactatagtggacttctcgagttatttaccactgcatcaaatcttatgccttaacctatattatttacatttgtcttagcttctaatctgcttccatct |
10865157 |
T |
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| Q |
418 |
ttctttctgaatggtagtagcttccttgtactgtgaaaattgccattgtggttgtgccaatttgtctttttcaaagctggatacattttttcatccacat |
517 |
Q |
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| T |
10865158 |
ttctttttgaatggtagtagcttccttgtactgtgaaaattgccattgtggttgtgccaatttgtctttttcaaagctggatacattttttcatccacat |
10865257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 10876715 - 10876958
Alignment:
| Q |
18 |
tgtatatcgtttgaatgcacagggatggagcagatgtgagaggatactttgcatggtcattactggacaacttcgaatgggctcaaggttataccaaacg |
117 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10876715 |
tgtatatcatttgaatgcacagggatggagctgatgtgagaggacactttgcatggtcattactggataacttcgaatgggctcaaggttataccaaacg |
10876814 |
T |
|
| Q |
118 |
cttcggattggtctatgtagattacaaaaatggactcactaggcacccaaagtcttctgcatattggttttcgcggtttctgaaagatgggacaaacaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
10876815 |
tttcggattggtctatgtagattacaaaaatggactcaccaggcacccaaagtcttctgcatattggttttcgcggtttcttaaagatggggcaaacaag |
10876914 |
T |
|
| Q |
218 |
aagggtaaagaagagtagttcacgttcctcattatgtgttttac |
261 |
Q |
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|||||||||||| | |||||||| ||| |||||||||| |||| |
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| T |
10876915 |
aagggtaaagaacaatagttcactttcaccattatgtgtcttac |
10876958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 517
Target Start/End: Original strand, 10877323 - 10877396
Alignment:
| Q |
442 |
cttgtactgtgaaaattgccattgtggttgtgccaatttgtctttttcaaagctggatacattttttcatccacat |
517 |
Q |
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|||||| ||||||||| || ||||||||||||||| ||| ||||||||||||| |||||||||| ||||||| |
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| T |
10877323 |
cttgtattgtgaaaatggctattgtggttgtgccagattg--tttttcaaagctgcgtacatttttttctccacat |
10877396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 54994430 - 54994482
Alignment:
| Q |
38 |
agggatggagcagatgtgagaggatactttgcatggtcattactggacaactt |
90 |
Q |
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| T |
54994430 |
agggaaggagcagatgttagaggatactttgcctggtccttgcttgacaactt |
54994482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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