View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21550_low_24 (Length: 203)
Name: NF21550_low_24
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21550_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 35477561 - 35477483
Alignment:
| Q |
34 |
atgaaaaagagttcatggtaattatatatttgatatgcctttaatcctcttatgatatgcctttaatcctattattgtc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35477561 |
atgaaaaagagttcatggtaattatatatttgatatgcctttaatcctcttatgatatgcctttaatcctattattgtc |
35477483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 35477454 - 35477380
Alignment:
| Q |
112 |
caaaggaaaataaatttgaggaccgatataatgcccctatgccactcgagaggtacaatcaaacacccacaatat |
186 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35477454 |
caaaggaaaagaaatttgaggaccgatataatgcccctatgccactcgagaggtacaatcaaacacccataatat |
35477380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University