View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21550_low_3 (Length: 519)
Name: NF21550_low_3
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21550_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 42 - 274
Target Start/End: Complemental strand, 33634390 - 33634151
Alignment:
| Q |
42 |
taatcttcattcgagaatttgcggacacgtgatataaaa-ttaaactctaatttatttt----aaat-tannnnnnngtacacgtcatctcagagataat |
135 |
Q |
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| T |
33634390 |
taatcttcattcgagaatttgcggacacgtgatataaaaattaaactctaatttattttgaaaaaatattattttttgtgcacgtcatctcagagataat |
33634291 |
T |
|
| Q |
136 |
ttcggccataaattacaaagcgtggtttcactttattt-gcgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatc |
234 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33634290 |
ttcggccataaattacaaagcgtggtttcacttttttttgcgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatc |
33634191 |
T |
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| Q |
235 |
aaactcactgagtgacgagtgggaaatttcgttcgcacga |
274 |
Q |
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| T |
33634190 |
aaactcactgagtgacgagtgggaaatttcgttcgcacga |
33634151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 338 - 503
Target Start/End: Complemental strand, 33634084 - 33633919
Alignment:
| Q |
338 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
437 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
33634084 |
gttcgcatccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgattctcctccgatctcaacttctccgacgtcgttc |
33633985 |
T |
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| Q |
438 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttc |
503 |
Q |
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| T |
33633984 |
tcaccgttgccttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttc |
33633919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 338 - 503
Target Start/End: Original strand, 29191750 - 29191915
Alignment:
| Q |
338 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
437 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||| | | |
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| T |
29191750 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcc |
29191849 |
T |
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| Q |
438 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttc |
503 |
Q |
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| T |
29191850 |
tcaccgttgcattcaacgccaaactccttgtaactccgataacttttcctttttcgatttcgtttc |
29191915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 29191578 - 29191683
Alignment:
| Q |
175 |
cgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagat---------caaactcactgagtgacgagtgggaaatttcg |
265 |
Q |
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|||||| ||| | |||| |||| |||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
29191578 |
cgagagtaaaaaggaaaggagagaattcaaaaaaatggcgggaacagttgcagtgagatcaacaacaacaaactcactgagtgacgagtgggaaatttcc |
29191677 |
T |
|
| Q |
266 |
ttcgca |
271 |
Q |
| |
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|||||| |
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|
| T |
29191678 |
ttcgca |
29191683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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