View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21550_low_5 (Length: 450)
Name: NF21550_low_5
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21550_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 2095014 - 2094601
Alignment:
| Q |
11 |
catcatcaacgttattgtatttttcctgtatgctattcaataaagtatgttaaatctttctctcaacgttaacccgtttaaccaaggctcctttcnnnnn |
110 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2095014 |
catcatcaacgttattgtatttttccggtatgctattcaataaagtatgttaaatctttctctcaacgttaacccgtttaaccaaggctcctttcaaaaa |
2094915 |
T |
|
| Q |
111 |
nnnnnngtgtccctaccaatcccaccttcatccttaaactaatgaaaaccaatttaaggaatgatccactaaccctttatttaaactccaaatatctccc |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2094914 |
aaa---gtgtccctaccatccccaccttcatccttaaactaatgaaaaccaatttaaggaatgatccactaaccctttatttaaactccaaatatctccc |
2094818 |
T |
|
| Q |
211 |
caagtaaccccatatttgtcttgaaggactctcacccataacccactattgatctattttcatcctccacaaccatatttgcttagtaaagcaaaattaa |
310 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2094817 |
-aagtatccccatatttgtcttgaaggactctcacccataacccactattgatctattttcatcctccacaaccatatttgcatagtaaagcaaaattaa |
2094719 |
T |
|
| Q |
311 |
aagctttgatgttcctaatgtctaaccctccatccttcctccttctacaaattttatcgcattttacctaatgaattttccctgtctcttcactcgcatc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2094718 |
aagctttgatgttcctaatgtctaaccctccatccttcctccttctacaaattttatcgcattttacctaatgaattttccctgtctctccactcgcatc |
2094619 |
T |
|
| Q |
411 |
tactttttattttatctt |
428 |
Q |
| |
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|||||||||||||||||| |
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| T |
2094618 |
tactttttattttatctt |
2094601 |
T |
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