View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21550_low_6 (Length: 441)
Name: NF21550_low_6
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21550_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 32 - 439
Target Start/End: Original strand, 16794281 - 16794691
Alignment:
| Q |
32 |
gcttttctttgcaatactgggaatgttattgttcctacctggtttctactacacgagggttgcatattatgcttacaaaggatacaaagggttctctttc |
131 |
Q |
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| T |
16794281 |
gcttttctttgcaatactgggaatgttattgttcatacctggtttctactacacgaggattgcatattatgcttacaaaggatacaaagggttctctttc |
16794380 |
T |
|
| Q |
132 |
tctagcatacctcctgtgtagctctcataattcaagttcagtttcacagcttccttatgtacatatcttcccttattgtactccaccacctttcttgtan |
231 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16794381 |
tctaacatacctcctgtgtagctctcataattcaagttcagtttcacagcttccttatgtacatatcttcccttattgtactccaccacctttcttgta- |
16794479 |
T |
|
| Q |
232 |
nnnnnnnnnnnnngttcttgccggacatacaatgagtgtttagatttagattgtagtctgtaattgctcttaatatct-----tgctgttaagattttgt |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
16794480 |
-tttttttcttttgttcttgccggacatacaatgagtgtttagatttagattgtagtctgtaattgctcttaatatatactgctgctgttaagattttgt |
16794578 |
T |
|
| Q |
327 |
tcttcattgttaattgtcctgctccaaacctgttgttgaatagtttgtgtttctcatctttctttatgattttaataatagcactccttgataaattagt |
426 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || | |
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| T |
16794579 |
tcttcattgttaattgtcctgctccaaacccgttgttgaatagtttgtgtttctcatctttctttatgattttaataatagcacaccttgataaagtatt |
16794678 |
T |
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| Q |
427 |
tcgtattctcttc |
439 |
Q |
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||||||| ||||| |
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| T |
16794679 |
tcgtattttcttc |
16794691 |
T |
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Back To:
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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 52649663 - 52649551
Alignment:
| Q |
36 |
ttctttgcaatactgggaatgttattgttcctacctggtttctactacacgagggttgcatattatgcttacaaaggatacaaagggttctctttctcta |
135 |
Q |
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|||||||||||||||||| | |||||| |||| ||||||||||| || || ||||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
52649663 |
ttctttgcaatactgggatcaatcttgttcataccaggtttctactatacacggattgcatactatgcttacaagggatacaaagggttctcattctcta |
52649564 |
T |
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| Q |
136 |
gcatacctcctgt |
148 |
Q |
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|||||||||||| |
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| T |
52649563 |
acatacctcctgt |
52649551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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