View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21551_high_2 (Length: 642)
Name: NF21551_high_2
Description: NF21551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21551_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 203 - 623
Target Start/End: Original strand, 15301660 - 15302068
Alignment:
| Q |
203 |
acagcttgaaattcccataaaattctagactatactaaagttattgaagtaacaccaagatgtccacaagctggttctctaacagatgatcattcctcgg |
302 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15301660 |
acagcttgaa-ttcccataaaattccagactatactaaagttattgaagtaacaccaagatgtccacaagctggttctctaactgatgatcattcctcgg |
15301758 |
T |
|
| Q |
303 |
cgactgattaaagcacccctgtacatgttacaacagtacaaacagagaaacagacatagaagaggtgagtacatcataaataaattacatgttacataca |
402 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
15301759 |
cgactgattaaagcacccctttacatgttacaacagtacaaacaga--------catataagaggtgagtgcatcataaataaattacatgttacgtaca |
15301850 |
T |
|
| Q |
403 |
aatagatgaaacacacccaatacaataccatatagcaccactaacaacttaaatcacacaactacaactatatcgtcgtaggtagaaataggttaaaaat |
502 |
Q |
| |
|
|||| |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15301851 |
aataaatgaaacaaacccagcacaacaccatatagcaccactaacaacttaaatcacacaactacaactatatcgt---aggtagaaataggttaaaaat |
15301947 |
T |
|
| Q |
503 |
attcagcagtcaacaccaaacaaaatcactaacaactcaaatcactagaacattacgacattattatgagtgacacaatattaatccacaaatcataata |
602 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15301948 |
actcagcagtcaacaccaaacaaaatcacaaacaactcctatcgttagaacattacgacattattatgagtgacacaatattaatacacaaatcataata |
15302047 |
T |
|
| Q |
603 |
aatgcatcacagtacaatgct |
623 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
15302048 |
aatgcatcacaatacaatgct |
15302068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 195 - 434
Target Start/End: Original strand, 15294456 - 15294695
Alignment:
| Q |
195 |
taaaatacacagcttgaaattcccataaaattctagactatactaaagttattgaagtaacaccaagatgtccacaagctggttctctaacagatgatca |
294 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15294456 |
taaaatacacagcttgaaattcacataaaattccagcctataagaaagtaattggagtaacaccaagatgtccacaagctggttctctaactgatgatca |
15294555 |
T |
|
| Q |
295 |
ttcctcggcgactgattaaagcacccctgtacatgttacaacagtacaaacagagaaacagacatagaagaggtgagtacatcataaataaattacatgt |
394 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15294556 |
ttcctcggcggctgattaaagcacccctgtacatgttacaacagtacaaacagagaaacagacatagaagaggttagtacatcataaataaattacatgt |
15294655 |
T |
|
| Q |
395 |
tacatacaaatagatgaaacacacccaatacaataccata |
434 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
15294656 |
tacgtacaaatagatgaaacaaacccaatacaacaccata |
15294695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 346
Target Start/End: Original strand, 40693746 - 40693841
Alignment:
| Q |
250 |
agtaacaccaa-gatgtccacaagctggttctctaacagatgatcattcctcggcgactgattaaagcacccctgtacatgttacaacagtacaaaca |
346 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||| ||| || |||| || ||||| || ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
40693746 |
agtaacaccaaagttgtccacaagctggttctcaaaccgatcat--ttccacgacgacttatgaaagctcccctgtacatgttacaagtgtacaaaca |
40693841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University