View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21551_high_3 (Length: 536)
Name: NF21551_high_3
Description: NF21551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21551_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Original strand, 46894601 - 46895103
Alignment:
| Q |
17 |
aataacaactcttgtagcaccaacacttctcaacttgtctgatgtctggcacatgtcaatgtccgacaccgatacatgtgattacaataaattgcgtcat |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
46894601 |
aataacaacttttgtagcaccaacacttctcaacttgtctgatgtctggcacatgtcaatgtacgacac-gatacatgtgattacactaaattgcgtcat |
46894699 |
T |
|
| Q |
117 |
tttatcaaataaattatcagtgtcaactcgtcaatgtcagtagaaaaacagtataagaacatagcaacgaaacagacctggaagaccagaaggaatggac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894700 |
tttatcaaataaattatcagtgtcaactcgtcaatgtcagtagaaaaacagtataagaacatagcaacgaaacagacctggaagaccagaaggaatggac |
46894799 |
T |
|
| Q |
217 |
catgtgaatgaatcgaagaattcagtaatattaacgtcaggaaacttttctttgacatagcgttcaacggaaagcttgcttttaaatataatcgagcttc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894800 |
catgtgaatgaatcgaagaattcagtaatattaacgtcaggaaacttttctttgacatagcgttcaacggaaagcttgcttttaaatataatcgagcttc |
46894899 |
T |
|
| Q |
317 |
ggtttgcaacaagacgatgaggaacatacagataccggtctcgataattaccgttatttgaaatcctcttaccggatttccatcgccaaatgtcaccggg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894900 |
ggtttgcaacaagacgatgaggaacatacagataccggtctcgatagttaccgttatttgaaatcctcttaccggatttccatcgccaaatgtcaccggg |
46894999 |
T |
|
| Q |
417 |
attcggaaaattctccggcgcatagggtaaaccttcgccggattgttcaggtgccaccggcgcaacaagatttgacgagttgctgccaccattgctagcc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46895000 |
attcggaaaattctccggcgcatagggtaaaccttcgccggattgttcaggtgccaccggcgcaacaagatttgacgagttgctgccaccattgctagcc |
46895099 |
T |
|
| Q |
517 |
acag |
520 |
Q |
| |
|
|||| |
|
|
| T |
46895100 |
acag |
46895103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 32154686 - 32154630
Alignment:
| Q |
70 |
tgtcaatgtccgacaccgatacatgtgattacaataaattgcgtcattttatcaaat |
126 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||||| |||||||| |||||| |
|
|
| T |
32154686 |
tgtcaatgtccgacaccgagacatgtgattgcagtaaattgtgtcattttctcaaat |
32154630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University