View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21551_high_8 (Length: 327)

Name: NF21551_high_8
Description: NF21551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21551_high_8
NF21551_high_8
[»] chr5 (7 HSPs)
chr5 (108-327)||(13299791-13300009)
chr5 (4-98)||(13300041-13300135)
chr5 (4-98)||(13301737-13301831)
chr5 (20-97)||(8880873-8880950)
chr5 (20-97)||(32685128-32685205)
chr5 (24-98)||(5513409-5513483)
chr5 (43-98)||(39413583-39413638)
[»] chr4 (2 HSPs)
chr4 (20-97)||(25750459-25750536)
chr4 (23-97)||(45039353-45039427)
[»] chr2 (3 HSPs)
chr2 (20-97)||(5245910-5245987)
chr2 (22-98)||(27282520-27282596)
chr2 (24-97)||(43311961-43312034)
[»] chr1 (11 HSPs)
chr1 (22-97)||(2271865-2271940)
chr1 (23-97)||(2711831-2711905)
chr1 (24-98)||(17983386-17983460)
chr1 (23-97)||(34405774-34405848)
chr1 (24-97)||(34408911-34408984)
chr1 (22-97)||(5344201-5344276)
chr1 (20-97)||(2273266-2273343)
chr1 (22-97)||(31565463-31565538)
chr1 (23-78)||(25493208-25493263)
chr1 (23-70)||(34410353-34410400)
chr1 (24-98)||(42054556-42054630)
[»] scaffold0471 (1 HSPs)
scaffold0471 (23-97)||(1282-1356)
[»] chr8 (2 HSPs)
chr8 (23-97)||(36111409-36111483)
chr8 (23-79)||(10436528-10436584)
[»] chr7 (2 HSPs)
chr7 (24-98)||(41294149-41294223)
chr7 (23-97)||(45940023-45940097)
[»] chr6 (1 HSPs)
chr6 (20-98)||(5635429-5635507)
[»] chr3 (1 HSPs)
chr3 (23-97)||(43559542-43559616)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 108 - 327
Target Start/End: Complemental strand, 13300009 - 13299791
Alignment:
Q  108 atcaaaattagagtctactatttatagtatttgtatttgtaacgtgtcaaagatttaacggctgacggcgccatagaaatgctcaaaacaaatacgcagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13300009 atcaaaattagagtctactatttatagtatttgtatttgtaacgtgtcaaagatttaacggctgacggcgccatagaaatgctcaaaacaaatacgcagt 13299910  T
Q  208 attattatattcttatacctatagttctccttgaataatgaaatacttcactgtagaaagtacatttaaaattcacaactcacgagtcgcagcagtgatc 307  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  13299909 attattatattcttatacttatagttctccttgaataatgaaatacttcactgtagaaagtacattt-acattcacaactcacgagtcgcagcagtgatc 13299811  T
Q  308 tataatattatttaaatcaa 327  Q
    ||||||||||||||||||||    
T  13299810 tataatattatttaaatcaa 13299791  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 13300135 - 13300041
Alignment:
Q  4 aagaatatgtaaatataaatggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggccaa 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  13300135 aagaaaatgtaaatataaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgagacctgcatgggccaa 13300041  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 13301831 - 13301737
Alignment:
Q  4 aagaatatgtaaatataaatggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggccaa 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  13301831 aagaaaatgtaaatataaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgagacctgcatgggccaa 13301737  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 8880950 - 8880873
Alignment:
Q  20 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  8880950 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 8880873  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 32685205 - 32685128
Alignment:
Q  20 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  32685205 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 32685128  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 5513483 - 5513409
Alignment:
Q  24 ggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||||||    
T  5513483 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 5513409  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 39413583 - 39413638
Alignment:
Q  43 ttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggccaa 98  Q
    |||||||||||||||| |||||| ||||  ||||||| ||||||| ||||||||||    
T  39413583 ttagagcgtcgtgctattaacgcgaaggtcgcaggtttgagacctacatgggccaa 39413638  T

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Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 25750459 - 25750536
Alignment:
Q  20 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  25750459 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 25750536  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 45039353 - 45039427
Alignment:
Q  23 tggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  45039353 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 45039427  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 5245910 - 5245987
Alignment:
Q  20 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  5245910 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 5245987  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 27282520 - 27282596
Alignment:
Q  22 atggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||||||    
T  27282520 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 27282596  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 43312034 - 43311961
Alignment:
Q  24 ggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  43312034 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 43311961  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 2271865 - 2271940
Alignment:
Q  22 atggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||    
T  2271865 atggcccattagctcagttggttagagcgttgtgctaataacgcaaaggtcgcaggttcgaaacctgcatgggcca 2271940  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 2711905 - 2711831
Alignment:
Q  23 tggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  2711905 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 2711831  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 17983460 - 17983386
Alignment:
Q  24 ggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||||||    
T  17983460 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 17983386  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 34405774 - 34405848
Alignment:
Q  23 tggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  34405774 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 34405848  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 34408911 - 34408984
Alignment:
Q  24 ggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  34408911 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 34408984  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 5344201 - 5344276
Alignment:
Q  22 atggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    ||||||||||| || ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  5344201 atggcccattaacttagtgggttagagcgtcgtgctaataacgcgaaggttgcaggttcgagacctgcatgggcca 5344276  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 2273266 - 2273343
Alignment:
Q  20 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| ||||  ||||||| |||||||||||||||||    
T  2273266 aaatggcccattagctcagttggttagagtgttgtgctaataacgcgaaggtcgcaggtttgagacctgcatgggcca 2273343  T

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Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 31565538 - 31565463
Alignment:
Q  22 atggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||  |||||||||| ||||||||||||||    
T  31565538 atggcccattagcttagttggttagagcgtcgtgctaataacgtgaaggtcgcaggttcgaaacctgcatgggcca 31565463  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 25493208 - 25493263
Alignment:
Q  23 tggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggt 78  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  25493208 tggcctattagctcagttggttagagcgtcgtgctaataacgcgaaggttgcaggt 25493263  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 34410353 - 34410400
Alignment:
Q  23 tggcccattagctcagttggttagagcgtcgtgctaataacgcaaagg 70  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  34410353 tggcccattagctcagttggttagagtgtcgtgctaataacgcgaagg 34410400  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 42054556 - 42054630
Alignment:
Q  24 ggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggccaa 98  Q
    |||| ||||||||| |||||||||| || |||||||||| |  ||||  ||||||||||||||||||||||||||    
T  42054556 ggcctattagctcaattggttagagtgtggtgctaataaggtcaaggtcgcaggttcgagacctgcatgggccaa 42054630  T

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Target: scaffold0471 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 1282 - 1356
Alignment:
Q  23 tggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  1282 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 1356  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 36111409 - 36111483
Alignment:
Q  23 tggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  36111409 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 36111483  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 10436528 - 10436584
Alignment:
Q  23 tggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggtt 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||    
T  10436528 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggtt 10436584  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 41294149 - 41294223
Alignment:
Q  24 ggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||||||    
T  41294149 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 41294223  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 45940097 - 45940023
Alignment:
Q  23 tggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  45940097 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 45940023  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 5635507 - 5635429
Alignment:
Q  20 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggccaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| | |||||||||||||||    
T  5635507 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcaaaacctgcatgggccaa 5635429  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 43559542 - 43559616
Alignment:
Q  23 tggcccattagctcagttggttagagcgtcgtgctaataacgcaaaggctgcaggttcgagacctgcatgggcca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||    
T  43559542 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 43559616  T

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