View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21551_low_1 (Length: 703)
Name: NF21551_low_1
Description: NF21551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21551_low_1 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0359 (1 HSPs) |
| | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
| [»] scaffold0671 (2 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0512 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 154; Significance: 3e-81; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 239 - 432
Target Start/End: Original strand, 33757704 - 33757897
Alignment:
| Q |
239 |
ggtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgca |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
33757704 |
ggtgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacaca |
33757803 |
T |
|
| Q |
339 |
agaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
33757804 |
agaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatggtttgagttgaa |
33757897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 240 - 425
Target Start/End: Original strand, 13179622 - 13179807
Alignment:
| Q |
240 |
gtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||| ||| |
|
|
| T |
13179622 |
gtgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagtttaattaaaagcacaaaacacaa |
13179721 |
T |
|
| Q |
340 |
gaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttg |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
13179722 |
gaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttg |
13179807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 241 - 425
Target Start/End: Original strand, 13184281 - 13184465
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||| |||| |
|
|
| T |
13184281 |
tgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagtttaattaaaagcacaaaacacaag |
13184380 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttg |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
13184381 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttg |
13184465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 13180726 - 13180763
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13180726 |
ttgaattgaagcacttgtgtcatggacaaccatgccct |
13180763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 13185260 - 13185297
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13185260 |
ttgaattgaagcacttgtgtcatggacaaccatgccct |
13185297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 33758804 - 33758841
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33758804 |
ttgaattgaagcacttgtgtcatggacaaccatgccct |
33758841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 4e-80; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 241 - 432
Target Start/End: Complemental strand, 16157365 - 16157174
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |
|
|
| T |
16157365 |
tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacactag |
16157266 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
16157265 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaatgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
16157174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 241 - 432
Target Start/End: Original strand, 21368381 - 21368572
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || | |
|
|
| T |
21368381 |
tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgtttgctgaaagattaattaaaggcacaaaacacagg |
21368480 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
21368481 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
21368572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 241 - 426
Target Start/End: Original strand, 22707434 - 22707614
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||| ||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||| |||| |
|
|
| T |
22707434 |
tgatgaatactattt-gtaaaaattgtttatatttgacttttaattatgaattgataaaagttgcttgattaaagattat-tataggcacaaaacacaag |
22707531 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttga |
426 |
Q |
| |
|
||||| | | |||||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
22707532 |
aaatggaatgaaaatattgtta---taatgatgtgccaaaaggaaaagaaaattatgtattgggattaattttgataatgatttga |
22707614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 595
Target Start/End: Complemental strand, 44356743 - 44356652
Alignment:
| Q |
504 |
gggcctggttgtgagcttacggagtccccgttcatgcttggaatgaagtgtttttcaggttgtgtgtgaagggagttggacggtttattcat |
595 |
Q |
| |
|
|||| |||||| ||| |||||| || ||| | |||||||||||||| | || |||||| |||||||||| | |||||||||||||||||| |
|
|
| T |
44356743 |
gggcttggttgcgagtttacggtgttcccatacatgcttggaatgatgatttcttcaggatgtgtgtgaatcgtgttggacggtttattcat |
44356652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 21369457 - 21369494
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21369457 |
ttgaattgaagcacttgtgtcatggacaaccatgccct |
21369494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 4e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 241 - 432
Target Start/End: Original strand, 21465005 - 21465196
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
21465005 |
tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag |
21465104 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
21465105 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
21465196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 241 - 432
Target Start/End: Original strand, 44794490 - 44794681
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
44794490 |
tgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag |
44794589 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
44794590 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
44794681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 241 - 432
Target Start/End: Complemental strand, 44795085 - 44794894
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
44795085 |
tgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag |
44794986 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
44794985 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
44794894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 148; Significance: 1e-77; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 241 - 432
Target Start/End: Complemental strand, 289301 - 289110
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
289301 |
tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggctcaaaacacaag |
289202 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
289201 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
289110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 241 - 432
Target Start/End: Complemental strand, 37260746 - 37260555
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
37260746 |
tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag |
37260647 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
37260646 |
aaatgaactaaaaatattgtcaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
37260555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 428 - 456
Target Start/End: Complemental strand, 37259649 - 37259621
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaa |
456 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37259649 |
ttgaattgaagcacttgtgtcatggacaa |
37259621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0359 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0359
Description:
Target: scaffold0359; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 241 - 432
Target Start/End: Original strand, 8503 - 8694
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
8503 |
tgatgaacactatttcgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag |
8602 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8603 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
8694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 241 - 432
Target Start/End: Original strand, 33516 - 33707
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
33516 |
tgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag |
33615 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
33616 |
aaatgaactaaaattattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgcattgggattatttttgacaatgatttgagttgaa |
33707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 241 - 432
Target Start/End: Original strand, 21299132 - 21299323
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
21299132 |
tgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaag |
21299231 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
21299232 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
21299323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 254 - 432
Target Start/End: Complemental strand, 9344424 - 9344249
Alignment:
| Q |
254 |
tttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaagaaatgaactaaaa |
353 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| || ||||| || || | |
|
|
| T |
9344424 |
tttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaatattaattataggcacaaaacaaaataaatggacaaata |
9344325 |
T |
|
| Q |
354 |
atattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
||||| |||||| || |||||||||||| |||| ||||||||||||| ||||| ||||| || ||||||||||||||| |
|
|
| T |
9344324 |
atatt-ttaatg-aatgatgtgccaaaa-gaaacgaaaattatgtattaggattgattttgacgatgatttgagttgaa |
9344249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Complemental strand, 12638830 - 12638793
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12638830 |
ttgaattgaagcacttgtgtcatggacaaccatgccct |
12638793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 21302617 - 21302654
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21302617 |
ttgaattgaagcacttgtgtcatggacaaccatgccct |
21302654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0671 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: scaffold0671
Description:
Target: scaffold0671; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 240 - 432
Target Start/End: Complemental strand, 2464 - 2272
Alignment:
| Q |
240 |
gtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaa |
339 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
2464 |
gtgatgaacactattttgagaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcacaaaacacaa |
2365 |
T |
|
| Q |
340 |
gaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||| |||| ||||| ||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
2364 |
gaaatgaactaaaaatattgttaatgaaaaggtgtgccaaaaagaaacgaaaatcatgtattgggattaattttgacaatgatttgagttgaa |
2272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0671; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 428 - 456
Target Start/End: Complemental strand, 1255 - 1227
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaa |
456 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1255 |
ttgaattgaagcacttgtgtcatggacaa |
1227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 240 - 432
Target Start/End: Original strand, 16417291 - 16417483
Alignment:
| Q |
240 |
gtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaa |
339 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |
|
|
| T |
16417291 |
gtgatgaacactattttatgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaaggcgcaaaacacaa |
16417390 |
T |
|
| Q |
340 |
gaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |||| ||||| |||||||||||||||||| |
|
|
| T |
16417391 |
gaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgagattaattttgacaatgatttgagttgaa |
16417483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 240 - 432
Target Start/End: Original strand, 17459592 - 17459784
Alignment:
| Q |
240 |
gtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| || |
|
|
| T |
17459592 |
gtgatgaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgcttgctgaaagattaattaaagtctcaaaacataa |
17459691 |
T |
|
| Q |
340 |
gaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
17459692 |
gaaatgatctaaaattattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
17459784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 241 - 432
Target Start/End: Original strand, 18774040 - 18774231
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
18774040 |
tgatgaacactattttgtgaaaattgatcatatttgacttttaattatgaattgataaaaattgcttgcagaaagattaattaaaggcacaaaacacaag |
18774139 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
18774140 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
18774231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 595
Target Start/End: Original strand, 20135328 - 20135419
Alignment:
| Q |
504 |
gggcctggttgtgagcttacggagtccccgttcatgcttggaatgaagtgtttttcaggttgtgtgtgaagggagttggacggtttattcat |
595 |
Q |
| |
|
|||| |||||| ||| |||||| || ||| | |||||||||||||| | || |||||| |||||||||| | |||||||||||||||||| |
|
|
| T |
20135328 |
gggcttggttgcgagtttacggtgttcccatacatgcttggaatgatgatttcttcaggatgtgtgtgaatcgtgttggacggtttattcat |
20135419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 18775140 - 18775177
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18775140 |
ttgaattgaagcacttgtgtcatggacaaccatgccct |
18775177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 6e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 245 - 432
Target Start/End: Complemental strand, 11475977 - 11475790
Alignment:
| Q |
245 |
gaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaagaaat |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
11475977 |
gaacactattttgtgaaaattgttcatatttgacttttaattatgaattgataaaagttgattgctgaaagattaattaaaggcacaaaacttaagaaat |
11475878 |
T |
|
| Q |
345 |
gaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
11475877 |
gaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa |
11475790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 241 - 413
Target Start/End: Complemental strand, 34456079 - 34455906
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaa-gttgcttgctgaaagattatataaaggcacaaaacgcaa |
339 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||| || |
|
|
| T |
34456079 |
tgatgaacactgttttgtgaaaattgttcatatttgacttttaattatgaattggtaaaaagttgcttgctgaaagattaaatataggcacaaaacataa |
34455980 |
T |
|
| Q |
340 |
gaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaa-ataaaaattatgtattgggatttatttt |
413 |
Q |
| |
|
||||| ||| |||||||||| ||||||| |||||| ||||||||| || |||||||| |||||||||| ||||| |
|
|
| T |
34455979 |
gaaatagactgaaaatattgtgaatgaaatgatgtg-caaaaggaacatgaaaattatatattgggattaatttt |
34455906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 428 - 465
Target Start/End: Complemental strand, 34454961 - 34454924
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34454961 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
34454924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Complemental strand, 11474883 - 11474846
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11474883 |
ttgaattgaagcacttgtgtcatggacaaccatgccct |
11474846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 241 - 432
Target Start/End: Original strand, 22821033 - 22821224
Alignment:
| Q |
241 |
tgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaag |
340 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
22821033 |
tgataaacactattttgtgaaaattgttcatatttgacttataattatgaattgataaaagttgcttgctgaaagattaattaaaggtacaaaacacaag |
22821132 |
T |
|
| Q |
341 |
aaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
22821133 |
aaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttggcaatgaattgagttgaa |
22821224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 22825867 - 22825904
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22825867 |
ttgaattgaagcacttgtgtcatggacaaccatgccct |
22825904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 130; Significance: 5e-67; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 240 - 425
Target Start/End: Complemental strand, 127366 - 127181
Alignment:
| Q |
240 |
gtgatgaacactattttgtgaaaattgttcatattttacttttaattatgaattgataaaagttgcttgctgaaagattatataaaggcacaaaacgcaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||| ||| |
|
|
| T |
127366 |
gtgatgaacactattttgtgaaaattgttcatatttgacttttaatcatgaattgataaaagttgcttgctgaaagtttaattaaaagcacaaaacacaa |
127267 |
T |
|
| Q |
340 |
gaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttg |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
127266 |
gaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttg |
127181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 4 - 41
Alignment:
| Q |
428 |
ttgaattgaagcacttgtgtcatggacaattatgccct |
465 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4 |
ttgaattgaagcacttgtgtcatggacaaccatgccct |
41 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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