View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21551_low_12 (Length: 320)
Name: NF21551_low_12
Description: NF21551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21551_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 13299820 - 13299523
Alignment:
| Q |
9 |
agcagagatctataatattatttaaatcaacatagatattctaatctaactaagcaccttcttccctttcatccaatacctttctgcttataaaactttc |
108 |
Q |
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| T |
13299820 |
agcagtgatctataatattatttaaatcaacatagatattctaatctaactaagcaccttcttccctttcacccaatacctttctgcttataaaactttc |
13299721 |
T |
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| Q |
109 |
tctttgcatcttacaact--caaaatggaaactcttcttcctgcaccaacaatcactctcactcatctttaatcaatattaaccaagtaagattcttaag |
206 |
Q |
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|| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13299720 |
tc-ttgcatcttacaactcacaaaatggaaactcttcttcctgcaccatcaatcaccctcactcatctttaatcaatattaaccaagtaagattcttaag |
13299622 |
T |
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| Q |
207 |
cttgtgttttattttcannnnnnnnnnctatttatacataaagtcaaagaaattatctaactgtttaattaacaaaccctagctagggacataaattaac |
306 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13299621 |
cttgtgttttattttca--ttttttttctatttatacataaagtcaaagaaattatctaactgtttaattaacaaaccctagctagggacataaattaac |
13299524 |
T |
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