View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21551_low_16 (Length: 237)

Name: NF21551_low_16
Description: NF21551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21551_low_16
NF21551_low_16
[»] chr7 (3 HSPs)
chr7 (1-221)||(9688162-9688385)
chr7 (43-141)||(14972100-14972198)
chr7 (43-141)||(15401576-15401674)
[»] chr4 (2 HSPs)
chr4 (1-221)||(13554539-13554762)
chr4 (49-203)||(28801727-28801881)
[»] chr2 (1 HSPs)
chr2 (48-183)||(19391883-19392017)
[»] chr3 (2 HSPs)
chr3 (43-196)||(21389347-21389500)
chr3 (43-108)||(9025431-9025496)
[»] chr8 (1 HSPs)
chr8 (48-221)||(14757467-14757638)
[»] chr6 (4 HSPs)
chr6 (43-132)||(23986557-23986646)
chr6 (43-132)||(24000158-24000247)
chr6 (48-132)||(23998794-23998878)
chr6 (43-132)||(23999476-23999565)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9688385 - 9688162
Alignment:
Q  1 gtgattattaatttcatttttgtttcttcaaaaataaaac---tgtctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttg 97  Q
    |||||||||||||||||||| ||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9688385 gtgattattaatttcattttggtttcttcaaaaaaaaaaaaattgtctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttg 9688286  T
Q  98 agaaaagaatcggatgctagtggttttgttaaaatgtgggcaagttcatacttggtgtcaatgtattcaaagattacatccttcttttctacaagatcct 197  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9688285 agaaaataatcggatggtagtggttttgtaaaaatgtgggcaagttcacacttggtgtcaatgtattcaaagattacatccttcttttctacaagattct 9688186  T
Q  198 taaggataaatgatgccttatttc 221  Q
    ||||||||||||||| ||||||||    
T  9688185 taaggataaatgatgtcttatttc 9688162  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 14972100 - 14972198
Alignment:
Q  43 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaag 141  Q
    |||| ||||||||| | |||||||||| | ||||||||  |||||||  || ||||||||||| | ||||| |||||||||||| ||||| | ||||||    
T  14972100 tcttgcttatttaaggaaagaggtatccaagatacctagttccctacggatcttgagaaaagacttggatggtagtggttttgtgaaaatatcggcaag 14972198  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 15401576 - 15401674
Alignment:
Q  43 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaag 141  Q
    |||| ||||||||| | |||||||||| | ||||||||  |||||||  || ||||||||||| | ||||| |||||||||||| ||||| | ||||||    
T  15401576 tcttgcttatttaaggaaagaggtatccaagatacctagttccctacggatcttgagaaaagacttggatggtagtggttttgtgaaaatatcggcaag 15401674  T

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Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13554762 - 13554539
Alignment:
Q  1 gtgattattaatttcatttttgtttcttcaaaaataaaac---tgtctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttg 97  Q
    |||||||||||||||||||| ||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13554762 gtgattattaatttcattttggtttcttcaaaaaaaaaaaaattgtctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttg 13554663  T
Q  98 agaaaagaatcggatgctagtggttttgttaaaatgtgggcaagttcatacttggtgtcaatgtattcaaagattacatccttcttttctacaagatcct 197  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13554662 agaaaataatcggatggtagtggttttgtaaaaatgtgggcaagttcacacttggtgtcaatgtattcaaagattacatccttcttttctacaagattct 13554563  T
Q  198 taaggataaatgatgccttatttc 221  Q
    ||||||||||||||| ||||||||    
T  13554562 taaggataaatgatgtcttatttc 13554539  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 28801727 - 28801881
Alignment:
Q  49 ttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaagttcatac 148  Q
    |||||||||| |||||||||||| ||||||||  |||||||  || ||  |||| || ||||||| ||| ||||||||  ||||||  ||||||| | ||    
T  28801727 ttatttaaagtaagaggtatctatgatacctagttccctacggatcttacgaaaggagtcggatggtagaggttttgtagaaatgtcagcaagttgacac 28801826  T
Q  149 ttggtgtcaatgtattcaaagattacatccttcttttctacaagatccttaagga 203  Q
    || |||||||  || || ||  | || ||||||||||| ||| ||||| ||||||    
T  28801827 ttagtgtcaacatactcgaaagtcacgtccttcttttcaacatgatccctaagga 28801881  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 19391883 - 19392017
Alignment:
Q  48 cttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaagttcata 147  Q
    |||||||||||||||||||||||| ||||||||  |||||||| || ||||| ||||||||||||| ||| |||||| | |||||||  ||||| | | |    
T  19391883 cttatttaaagcaagaggtatctaagatacctag-tccctacagatcttgaggaaagaatcggatggtagcggttttataaaaatgtcagcaagatgaca 19391981  T
Q  148 cttggtgtcaatgtattcaaagattacatccttctt 183  Q
    ||| |||||||  || ||||| ||||||||||||||    
T  19391982 cttagtgtcaacatactcaaaaattacatccttctt 19392017  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 21389500 - 21389347
Alignment:
Q  43 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaagt 142  Q
    |||| |||||||||||||||||||||| | ||||||||| | |||||  |||||||||||||| ||||||| |||||||||||| |||| ||  |||||     
T  21389500 tcttgcttatttaaagcaagaggtatccaagatacctaatttcctacggattttgagaaaagactcggatggtagtggttttgtaaaaaagtcagcaagc 21389401  T
Q  143 tcatacttggtgtcaatgtattcaaagattacatccttcttttctacaagatcc 196  Q
    | |   || ||||||| ||| || ||  |||||||||||||||| ||| |||||    
T  21389400 tgacttttagtgtcaacgtactcgaacgttacatccttcttttcaacatgatcc 21389347  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 9025431 - 9025496
Alignment:
Q  43 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatc 108  Q
    |||| |||||||||||| |||||||| || |||||||| ||||||||||||||||| |||||||||    
T  9025431 tcttgcttatttaaagctagaggtatataagatacctagctccctacatattttgataaaagaatc 9025496  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 14757467 - 14757638
Alignment:
Q  48 cttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaagttcata 147  Q
    ||||||||||||||| |||||| | ||||||||  || ||||  ||||| |||||||| |||||||  ||||||||  | ||||| |  ||||||| | |    
T  14757467 cttatttaaagcaagtggtatccatgatacctagttcgctacggattttaagaaaagagtcggatggaagtggtttgctaaaaatatttgcaagttgaca 14757566  T
Q  148 cttggtgtcaatgtattcaaagattacatccttcttttctacaagatccttaaggataaatgatgccttatttc 221  Q
     ||||||||||| || ||||| |||||||| |||||||||||  || || |||  | |||||||||||||||||    
T  14757567 tttggtgtcaatatactcaaaaattacatcattcttttctacgtgaaccctaa--aaaaatgatgccttatttc 14757638  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 23986646 - 23986557
Alignment:
Q  43 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaat 132  Q
    |||| ||||||||| |||||||||||| | ||||||||  |||||||| || ||||||||||| ||||||| ||| |||||||| |||||    
T  23986646 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaat 23986557  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 24000247 - 24000158
Alignment:
Q  43 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaat 132  Q
    |||| ||||||||| |||||||||||| | ||||||||  |||||||| || ||||||||||| ||||||| ||| |||||||| |||||    
T  24000247 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaat 24000158  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 23998878 - 23998794
Alignment:
Q  48 cttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaat 132  Q
    ||||||||| |||||||||||| | ||||||||  |||||||| || ||||||||||| ||||||| ||| |||||||| |||||    
T  23998878 cttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaat 23998794  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 23999565 - 23999476
Alignment:
Q  43 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaat 132  Q
    |||| ||||||||| |||||||||||| | ||||||||  |||||||| || ||||||||||| ||||||| |||  ||||||| |||||    
T  23999565 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggagttttgtaaaaat 23999476  T

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