View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21551_low_17 (Length: 226)

Name: NF21551_low_17
Description: NF21551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21551_low_17
NF21551_low_17
[»] chr1 (13 HSPs)
chr1 (29-162)||(24227996-24228129)
chr1 (135-215)||(20908657-20908737)
chr1 (102-208)||(20110720-20110823)
chr1 (29-100)||(24236324-24236391)
chr1 (101-157)||(3170946-3171002)
chr1 (102-157)||(3181549-3181604)
chr1 (102-213)||(17017778-17017877)
chr1 (102-157)||(36099863-36099918)
chr1 (102-157)||(9750044-9750097)
chr1 (102-157)||(10256276-10256328)
chr1 (102-157)||(23160888-23160940)
chr1 (102-157)||(28379141-28379197)
chr1 (102-157)||(52351484-52351540)
[»] chr2 (5 HSPs)
chr2 (101-215)||(24838285-24838398)
chr2 (102-211)||(24843388-24843493)
chr2 (101-171)||(20567415-20567490)
chr2 (101-201)||(10899320-10899417)
chr2 (102-157)||(24415821-24415873)
[»] scaffold0622 (1 HSPs)
scaffold0622 (101-215)||(1862-1971)
[»] chr5 (4 HSPs)
chr5 (101-211)||(34637703-34637809)
chr5 (102-201)||(2157117-2157211)
chr5 (101-157)||(14446305-14446358)
chr5 (102-157)||(11208905-11208957)
[»] chr3 (14 HSPs)
chr3 (101-211)||(12396222-12396328)
chr3 (102-200)||(14078198-14078292)
chr3 (102-208)||(15960185-15960289)
chr3 (135-213)||(6252635-6252712)
chr3 (135-208)||(15961477-15961550)
chr3 (102-160)||(40799085-40799140)
chr3 (150-208)||(19198731-19198789)
chr3 (102-157)||(9381439-9381493)
chr3 (102-157)||(13076293-13076345)
chr3 (102-157)||(8784669-8784721)
chr3 (102-157)||(9535009-9535061)
chr3 (102-157)||(28325633-28325685)
chr3 (102-157)||(39371452-39371504)
chr3 (99-157)||(51989972-51990026)
[»] chr8 (9 HSPs)
chr8 (102-215)||(16376181-16376289)
chr8 (102-162)||(23772372-23772432)
chr8 (102-158)||(33561127-33561183)
chr8 (102-157)||(36077347-36077400)
chr8 (96-155)||(17442761-17442820)
chr8 (102-155)||(29378756-29378807)
chr8 (101-157)||(23470277-23470330)
chr8 (102-157)||(23290312-23290364)
chr8 (102-157)||(23363538-23363594)
[»] chr4 (9 HSPs)
chr4 (135-215)||(14357567-14357647)
chr4 (135-211)||(10249156-10249232)
chr4 (147-215)||(15560509-15560576)
chr4 (135-195)||(7136306-7136366)
chr4 (102-157)||(29042445-29042499)
chr4 (102-157)||(3189165-3189217)
chr4 (102-157)||(19143791-19143846)
chr4 (167-215)||(22089540-22089588)
chr4 (102-157)||(29030331-29030384)
[»] scaffold0004 (1 HSPs)
scaffold0004 (135-211)||(87592-87666)
[»] chr7 (13 HSPs)
chr7 (140-211)||(7488758-7488829)
chr7 (135-174)||(14304693-14304732)
chr7 (102-157)||(601987-602040)
chr7 (98-157)||(11052633-11052689)
chr7 (101-157)||(45931031-45931086)
chr7 (102-157)||(1775516-1775571)
chr7 (102-157)||(1986921-1986976)
chr7 (102-211)||(16409001-16409107)
chr7 (102-157)||(1997544-1997597)
chr7 (102-157)||(8002929-8002981)
chr7 (102-157)||(8013574-8013626)
chr7 (102-157)||(42865211-42865263)
chr7 (102-157)||(42875836-42875889)
[»] scaffold0037 (1 HSPs)
scaffold0037 (102-215)||(76448-76556)
[»] chr6 (16 HSPs)
chr6 (102-204)||(12347282-12347382)
chr6 (135-211)||(7811228-7811304)
chr6 (139-211)||(25591856-25591928)
chr6 (135-215)||(25929711-25929792)
chr6 (101-185)||(30451863-30451942)
chr6 (104-209)||(23295989-23296090)
chr6 (104-208)||(32335030-32335129)
chr6 (101-215)||(17304107-17304223)
chr6 (150-208)||(16463510-16463568)
chr6 (101-199)||(17446501-17446594)
chr6 (102-157)||(27383785-27383839)
chr6 (102-157)||(27474169-27474223)
chr6 (102-157)||(27503667-27503721)
chr6 (102-159)||(24717721-24717779)
chr6 (102-157)||(1902083-1902136)
chr6 (97-157)||(25678755-25678815)
[»] scaffold0009 (1 HSPs)
scaffold0009 (143-213)||(267952-268023)
[»] scaffold0201 (1 HSPs)
scaffold0201 (102-200)||(18400-18495)
[»] scaffold0598 (1 HSPs)
scaffold0598 (102-215)||(2587-2707)
[»] scaffold0273 (1 HSPs)
scaffold0273 (150-211)||(22260-22321)
[»] scaffold0017 (1 HSPs)
scaffold0017 (105-172)||(9921-9989)
[»] scaffold0398 (1 HSPs)
scaffold0398 (102-158)||(13307-13360)
[»] scaffold0040 (1 HSPs)
scaffold0040 (102-159)||(2930-2987)
[»] scaffold1507 (1 HSPs)
scaffold1507 (102-157)||(254-306)
[»] scaffold0171 (1 HSPs)
scaffold0171 (102-157)||(269-321)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 24228129 - 24227996
Alignment:
Q  29 tgaaccttgaagcaaaacaatcacaataacaacatagagctaagcaatgtgacctagcgagggatatcaaagctgaaggtgagaaaaacacaagagaggg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  24228129 tgaaccttgaagcaaaacaatcacaataacaacatagagctaagcaatgtgacctagcgagggatatcaaagttgaaggtgagaaaaacacaagaggggg 24228030  T
Q  129 tgggatgttgaattgtggtttctttttcttctcc 162  Q
     ||| |||||||||||||||||||||||||||||    
T  24228029 gggggtgttgaattgtggtttctttttcttctcc 24227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 20908657 - 20908737
Alignment:
Q  135 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagtgatg 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||    
T  20908657 gttgaattgtggtttctttttcttctcctaaaactgaagtcactgctcagaacctgatagacttcagcttctgaagtgatg 20908737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 20110823 - 20110720
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcag 201  Q
    |||||||||||||||||||||| |||| |||   |||||||||| ||||||||||||| |||||||||||  | |||| |||||  ||||||||||||||    
T  20110823 tgaaggtgagaaaaacacaagaaaggggggg---ttgaattgtgttttctttttcttcacctaaaactgagttcactgatcagaagctgatagagttcag 20110727  T
Q  202 cttctga 208  Q
     ||||||    
T  20110726 tttctga 20110720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 24236391 - 24236324
Alignment:
Q  29 tgaaccttgaagcaaaacaatcacaataacaacatagagctaagcaatgtgacctagcgagggatatcaaag 100  Q
    ||||||||||||||||||| |||||||||||||| |||||||||   || |||||| |||||||||||||||    
T  24236391 tgaaccttgaagcaaaaca-tcacaataacaacaaagagctaag---tgcgacctaacgagggatatcaaag 24236324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 3170946 - 3171002
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  3170946 ctgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 3171002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 3181549 - 3181604
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  3181549 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 3181604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 17017778 - 17017877
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcag 201  Q
    |||||||||||||||||||||| |||| ||    |||||||||| |||||||| |||||      |||||||| ||| ||||||  ||||||||||||||    
T  17017778 tgaaggtgagaaaaacacaaga-agggggg----ttgaattgtgatttctttt-cttct------actgaagtcactattcagaagctgatagagttcag 17017865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 36099863 - 36099918
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  36099863 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 36099918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 9750097 - 9750044
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  9750097 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 9750044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 10256276 - 10256328
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  10256276 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 10256328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 23160940 - 23160888
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  23160940 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 23160888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 28379141 - 28379197
Alignment:
Q  102 tgaaggtgagaaaaacacaaga-gagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| | ||| |||  ||||||||||| |||||||||||    
T  28379141 tgaaggtgagaaaaacacaagagggggggggggggttgaattgtgttttctttttct 28379197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 52351540 - 52351484
Alignment:
Q  102 tgaaggtgagaaaaacacaagaga-gggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||||| ||| |||  || |||||||| |||||||||||    
T  52351540 tgaaggtgagaaaaacacaagagagggggggggggtcgaattgtgttttctttttct 52351484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 24838285 - 24838398
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttca 200  Q
    |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  24838285 ctgaaggtgagaaaaacacaagag-gggtggggggttgaattgtggtttctttttcttctcctaaaactgaagtcactattcagaacctgatagagttca 24838383  T
Q  201 gcttctgaagtgatg 215  Q
    |||||||||||||||    
T  24838384 gcttctgaagtgatg 24838398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 24843388 - 24843493
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcag 201  Q
    ||||||||||||||||||||||  |||   || |||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||    
T  24843388 tgaaggtgagaaaaacacaagaacggg---ga-gttgaattgtggtttctttttcttctcctaaaactgaattcactgttcagaacctgatatagttcag 24843483  T
Q  202 cttctgaagt 211  Q
    ||||||||||    
T  24843484 cttctgaagt 24843493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 20567415 - 20567490
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatg-----ttgaattgtggtttctttttcttctcctaaaactga 171  Q
    |||||||||||||||||||||||| ||| |||  |     |||||||||| |||||||||||||||||||||||||    
T  20567415 ctgaaggtgagaaaaacacaagagggggggggggggggggttgaattgtgttttctttttcttctcctaaaactga 20567490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 10899417 - 10899320
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttca 200  Q
    ||||||||| ||||||||||||| | || |||   |||||||||| | |||||||||||||||||||||||  ||||||  ||||  |||||| ||||||    
T  10899417 ctgaaggtgggaaaaacacaagaaatgggggg---ttgaattgtgttgtctttttcttctcctaaaactgagtttactgagcagaagctgatatagttca 10899321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 24415873 - 24415821
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| ||   ||||||||||| |||||||||||    
T  24415873 tgaaggtgagaaaaacacaagaaagggggg---gttgaattgtgttttctttttct 24415821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 1862 - 1971
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttca 200  Q
    ||||||||||||||||||||||| |||| ||    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  1862 ctgaaggtgagaaaaacacaaga-agggggg----ttgaattgtggtttctttttcttctcttaaaactgaagttactgttcagatcctgatagagttca 1956  T
Q  201 gcttctgaagtgatg 215  Q
     ||||||||||||||    
T  1957 acttctgaagtgatg 1971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 34637703 - 34637809
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttca 200  Q
    |||||||||||||||||||||| ||||| |||   |||||||||| |||||||||||||||||||||||||| | || ||||||| ||||||||||||||    
T  34637703 ctgaaggtgagaaaaacacaag-gaggggggg---ttgaattgtgttttctttttcttctcctaaaactgaaatcaccgttcagaacctgatagagttca 34637798  T
Q  201 gcttctgaagt 211  Q
    |||||||||||    
T  34637799 gcttctgaagt 34637809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 2157211 - 2157117
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcag 201  Q
    ||||||||||||||||||||||      |||| ||||||||||| |||||||||||||||||||||||||||| | || |||||  ||||||||||||||    
T  2157211 tgaaggtgagaaaaacacaagaa-----gggaggttgaattgtgttttctttttcttctcctaaaactgaagtcattgatcagaagctgatagagttcag 2157117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 14446305 - 14446358
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  14446305 ctgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 14446358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 11208957 - 11208905
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||  |||| ||||||||||| |||||||||||    
T  11208957 tgaaggtgagaaaaacacaaga-agg--gggaggttgaattgtgttttctttttct 11208905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 12396222 - 12396328
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttca 200  Q
    ||||||||| ||||||||||||| |||| |||   ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |    
T  12396222 ctgaaggtgggaaaaacacaaga-aggggggg---ttgaattgtggtttctttttcttctcctaaaactgaagttatttttcagaacctgatagagttta 12396317  T
Q  201 gcttctgaagt 211  Q
    |||||||||||    
T  12396318 gcttctgaagt 12396328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 14078292 - 14078198
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttca 200  Q
    ||||||||||||||||||||||   || |||||  |||||||||||||||||||||||||||||||||||||| |||| ||| |   ||||||||||||    
T  14078292 tgaaggtgagaaaaacacaagaa--ggagggat--tgaattgtggtttctttttcttctcctaaaactgaagtcactgatcaaaagatgatagagttca 14078198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 15960289 - 15960185
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcag 201  Q
    ||||||||| |||||||||||| |||| | |  ||||||||||||||| ||||||||||||||| |||||||| |||| |||||  ||||||| ||||||    
T  15960289 tgaaggtgataaaaacacaaga-agggagagg-gttgaattgtggtttttttttcttctcctaatactgaagtcactgatcagaagctgatagtgttcag 15960192  T
Q  202 cttctga 208  Q
     ||||||    
T  15960191 gttctga 15960185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 6252635 - 6252712
Alignment:
Q  135 gttgaattgtggtttctttttctt--ctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagtga 213  Q
    ||||||||||||||||||||||||  ||||||   ||||||| ||||||||||  | ||||||||||||||||||||||||    
T  6252635 gttgaattgtggtttctttttcttttctccta---ctgaagtcactgttcagaagcagatagagttcagcttctgaagtga 6252712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 15961550 - 15961477
Alignment:
Q  135 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctga 208  Q
    |||||||||||||||| |||||||||||||||| |||||| || |  ||||  ||||||||||| |||||||||    
T  15961550 gttgaattgtggtttcattttcttctcctaaaattgaagtcaccgaccagaagctgatagagtttagcttctga 15961477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 40799085 - 40799140
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttct 160  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||    
T  40799085 tgaaggtgagaaaaacacaaga-agggtggg--gttgaattgtgttttctttttcttct 40799140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 19198789 - 19198731
Alignment:
Q  150 ctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctga 208  Q
    |||||| ||||||||||||||||||||||| ||| |  |||||||||||||| ||||||    
T  19198789 cttttttttctcctaaaactgaagttactgatcataagctgatagagttcaggttctga 19198731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 9381493 - 9381439
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  9381493 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 9381439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 13076293 - 13076345
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| ||   ||||||||||| |||||||||||    
T  13076293 tgaaggtgagaaaaacacaagaaagggggg---gttgaattgtgttttctttttct 13076345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 8784669 - 8784721
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  8784669 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 8784721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 9535009 - 9535061
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||| ||||| |||  ||||||||||| |||||||||||    
T  9535009 tgaaggtgagaaaaacacaag-gaggggggg--gttgaattgtgttttctttttct 9535061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 28325685 - 28325633
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  28325685 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 28325633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 39371452 - 39371504
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  39371452 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 39371504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 51990026 - 51989972
Alignment:
Q  99 agctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||||| |||| ||   ||||||||||| |||||||||||    
T  51990026 agctgaaggtgagaaaaacacaaga-agggggg---gttgaattgtgttttctttttct 51989972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 16376289 - 16376181
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcag 201  Q
    |||||||||||||||||||||| |||| ||    ||||||||||||||||||||||||||||||||||||| |  ||||||| | ||||||||||||||     
T  16376289 tgaaggtgagaaaaacacaaga-agggggg----ttgaattgtggtttctttttcttctcctaaaactgaaatcgctgttcacaacctgatagagttcaa 16376195  T
Q  202 cttctgaagtgatg 215  Q
    ||||||||||||||    
T  16376194 cttctgaagtgatg 16376181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 23772372 - 23772432
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcc 162  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  23772372 tgaaggtgagaaaaacacaagaggggggggggtgttgaattgtggtttctttttcttctcc 23772432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 33561183 - 33561127
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttctt 158  Q
    ||||||||||||||||||||||  |||||||  ||||||||||| || |||||||||    
T  33561183 tgaaggtgagaaaaacacaagaaggggtggggggttgaattgtgtttgctttttctt 33561127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 36077347 - 36077400
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  36077347 tgaaggtgagaaaaacacaagaaaggggggg--gttgaattgtgttttctttttct 36077400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 17442820 - 17442761
Alignment:
Q  96 caaagctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttcttttt 155  Q
    |||| |||||||||||||||||||||||| ||| |||  ||||||||||| | |||||||    
T  17442820 caaatctgaaggtgagaaaaacacaagaggggggggggggttgaattgtgttgtcttttt 17442761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 29378756 - 29378807
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttcttttt 155  Q
    ||||||||||||||||||||||| ||| |||  ||||||||||| |||||||||    
T  29378756 tgaaggtgagaaaaacacaagaggggggggg--gttgaattgtgttttcttttt 29378807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 23470330 - 23470277
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  23470330 ctgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 23470277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 23290312 - 23290364
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  23290312 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 23290364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 23363538 - 23363594
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggat-gttgaattgtggtttctttttct 157  Q
    |||||||||||||||||| |||| ||| ||| | ||||||||||| |||||||||||    
T  23363538 tgaaggtgagaaaaacacgagaggggggggggtggttgaattgtgttttctttttct 23363594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 14357567 - 14357647
Alignment:
Q  135 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagtgatg 215  Q
    ||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||    
T  14357567 gttgaattgtggtttctttctcgtctcctaaaactgaagtgactgttcagaacctgatagagttcggcttctgaagtgatg 14357647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 10249156 - 10249232
Alignment:
Q  135 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagt 211  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||| |||||| | |||||||||||||||||||||||    
T  10249156 gttgaattgtggtttctttctcttctcctaaaaccgaattcactattcagaacttgatagagttcagcttctgaagt 10249232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 15560509 - 15560576
Alignment:
Q  147 tttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagtgatg 215  Q
    ||||||| | |||||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||    
T  15560509 tttctttgttttctcctaaa-ctgaagtcactgttcagaacctaatagagttcagcttctgaagtgatg 15560576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 7136306 - 7136366
Alignment:
Q  135 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgataga 195  Q
    |||||||| || |||||||||||||||||||||| ||||||| || |||||  ||||||||    
T  7136306 gttgaattttgttttctttttcttctcctaaaaccgaagttaatgatcagaagctgataga 7136366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 29042499 - 29042445
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  29042499 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 29042445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 3189217 - 3189165
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  3189217 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 3189165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 19143846 - 19143791
Alignment:
Q  102 tgaaggtgagaaaaacacaag-agagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||| |||||| |||  ||||||||||| |||||||||||    
T  19143846 tgaaggtgagaaaaacacaagaagaggg-ggggggttgaattgtgttttctttttct 19143791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 22089540 - 22089588
Alignment:
Q  167 actgaagttactgttcagagcctgatagagttcagcttctgaagtgatg 215  Q
    |||||||| |||| |||||  | ||||||||||||||||||||||||||    
T  22089540 actgaagtcactgatcagaagcagatagagttcagcttctgaagtgatg 22089588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 29030384 - 29030331
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  29030384 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 29030331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 87592 - 87666
Alignment:
Q  135 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagt 211  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  | |||||||||||||||||||||||||    
T  87592 gttgaattgtggtttctttttcttctcctaaaactgaagtcactgttc--aacctgatagagttcagcttctgaagt 87666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 7488829 - 7488758
Alignment:
Q  140 attgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagt 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||    
T  7488829 attgtggtttctttttcttctcctaaaactgaagtcactgttcagaacctgatagaattcagcttatgaagt 7488758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 14304732 - 14304693
Alignment:
Q  135 gttgaattgtggtttctttttcttctcctaaaactgaagt 174  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  14304732 gttgaattgtggtttctttttcttctcctaaaactaaagt 14304693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 601987 - 602040
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||| ||| |||  ||||||||||| |||||||||||    
T  601987 tgaaggtgagaaaaacacaagaggggggggg--gttgaattgtgttttctttttct 602040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 11052633 - 11052689
Alignment:
Q  98 aagctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  11052633 aagctgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 11052689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 45931086 - 45931031
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  45931086 ctgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 45931031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 1775516 - 1775571
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1775516 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 1775571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 1986921 - 1986976
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1986921 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 1986976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 16409001 - 16409107
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcag 201  Q
    ||||||||||||||||| ||||    | |||| ||||||||||| ||||||||| ||||| ||||||  || | | |||||| |  ||||||||||||||    
T  16409001 tgaaggtgagaaaaacataaga---tgggggaggttgaattgtgttttctttttattctcttaaaacataattcattgttcaaaatctgatagagttcag 16409097  T
Q  202 cttctgaagt 211  Q
    ||||| ||||    
T  16409098 cttctaaagt 16409107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 1997544 - 1997597
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1997544 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 1997597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 8002981 - 8002929
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  8002981 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 8002929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 8013626 - 8013574
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  8013626 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 8013574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 42865211 - 42865263
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  42865211 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 42865263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 42875836 - 42875889
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  42875836 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 42875889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 76448 - 76556
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcag 201  Q
    |||||||||||||||||||||| |||| |     |||||||||||||||||| | |||||||||||||||||| |||||||||| ||||||| |||||||    
T  76448 tgaaggtgagaaaaacacaaga-agggggt----ttgaattgtggtttctttatgttctcctaaaactgaagtcactgttcagaacctgatacagttcag 76542  T
Q  202 cttctgaagtgatg 215  Q
    ||||| ||| ||||    
T  76543 cttctaaagggatg 76556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 12347282 - 12347382
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttctt-ctcctaaaactgaagttactgttcagagcctgatagagttca 200  Q
    ||||||||||||||||||||||  | | |||   ||||||||||||||||||||||| |||||||||||||||| ||| |||| | ||||||||||||||    
T  12347282 tgaaggtgagaaaaacacaagaatgaggggg---ttgaattgtggtttctttttctttctcctaaaactgaagtcactattcaaaacctgatagagttca 12347378  T
Q  201 gctt 204  Q
    ||||    
T  12347379 gctt 12347382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 7811228 - 7811304
Alignment:
Q  135 gttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagt 211  Q
    ||||||||||| ||||||||||||| |||||||||||| | |||||||||| | ||||||| || ||||||||||||    
T  7811228 gttgaattgtgttttctttttcttcacctaaaactgaattcactgttcagaacttgatagaatttagcttctgaagt 7811304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 25591856 - 25591928
Alignment:
Q  139 aattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagt 211  Q
    ||||||| |||||||||||||||| ||||||||| | ||| |||||| ||||||||||||||||||| |||||    
T  25591856 aattgtgttttctttttcttctcccaaaactgaattcactattcagaacctgatagagttcagcttccgaagt 25591928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 25929711 - 25929792
Alignment:
Q  135 gttgaattgtggtttctttttctt--ctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagtgatg 215  Q
    ||||||||||||||||||||||||  ||||||||  |||| | |||||||||| ||||||| |||||||||||||||||||||    
T  25929711 gttgaattgtggtttctttttcttttctcctaaat-tgaattcactgttcagaacctgatatagttcagcttctgaagtgatg 25929792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 30451942 - 30451863
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcaga 185  Q
    ||||||||||||||||||||||| |||| ||    |||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  30451942 ctgaaggtgagaaaaacacaaga-agggggg----ttgaattgtggttaatttttcttctcctaaaactgaagtcactgttcaga 30451863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 23295989 - 23296090
Alignment:
Q  104 aaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagct 203  Q
    |||||||||||||||||||| ||||  ||| ||| ||||||||||||||||| ||||||||| |||||| | |||||||||| ||| |||||||||| ||    
T  23295989 aaggtgagaaaaacacaaga-aggg--gga-gtttaattgtggtttctttttattctcctaagactgaattcactgttcagaacctaatagagttcaact 23296084  T
Q  204 tctgaa 209  Q
    | ||||    
T  23296085 tttgaa 23296090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 32335030 - 32335129
Alignment:
Q  104 aaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagct 203  Q
    |||||||||||||||||||| |||| |     |||||||||| |  ||||||||||||||||||||||| | |||| ||||| |||| ||||||||| ||    
T  32335030 aaggtgagaaaaacacaagaaaggggg-----ttgaattgtgttagctttttcttctcctaaaactgaattcactgatcagaacctggtagagttcaact 32335124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 17304223 - 17304107
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttc---tcctaaaactgaagttactgttcagagcctgatagagt 197  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||| |  ||||||||||   | ||   |||||||| |||| |||||  | ||||||||    
T  17304223 ctgaaggtgagaaaaacacaaga-agggtggggggttgaattgtgttagctttttcttcgttttctcctactgaagtcactgatcagaagcagatagagt 17304125  T
Q  198 tcagcttctgaagtgatg 215  Q
    ||||||||||||||||||    
T  17304124 tcagcttctgaagtgatg 17304107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 16463568 - 16463510
Alignment:
Q  150 ctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctga 208  Q
    |||||||||||||||||||||||||||||  |||||  |||||||||||||| ||||||    
T  16463568 ctttttcttctcctaaaactgaagttactaatcagaagctgatagagttcaggttctga 16463510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 17446594 - 17446501
Alignment:
Q  101 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttc 199  Q
    ||||||||||||||||||||||| ||      | ||||||||||| |  ||||||||||||||||||||||| | |||| ||||| |||||||||||||    
T  17446594 ctgaaggtgagaaaaacacaagaaaga-----aggttgaattgtgttaactttttcttctcctaaaactgaattcactgatcagaacctgatagagttc 17446501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 27383785 - 27383839
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  27383785 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 27383839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 27474169 - 27474223
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  27474169 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 27474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 27503667 - 27503721
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  27503667 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 27503721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 24717779 - 24717721
Alignment:
Q  102 tgaaggtgagaaaaacacaag-agagggtgggatgttgaattgtggtttctttttcttc 159  Q
    ||||||||||||||||||||| || ||| |||  ||||||||||| |||||||||||||    
T  24717779 tgaaggtgagaaaaacacaagaagggggaggggggttgaattgtgttttctttttcttc 24717721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 1902083 - 1902136
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1902083 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 1902136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 25678755 - 25678815
Alignment:
Q  97 aaagctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||| ||||||||||||||||||||||  ||| |||  ||| ||||||| |||||||||||    
T  25678755 aaagttgaaggtgagaaaaacacaagaagggggggggggttcaattgtgttttctttttct 25678815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 267952 - 268023
Alignment:
Q  143 gtggtttctttttctt--ctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagtga 213  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||| ||||||| |||||||||||||||||||    
T  267952 gtggtttctttttcttttctcctaaa-ctgaagtcactgttcagaacctgataaagttcagcttctgaagtga 268023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 18400 - 18495
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttactgttcagagcctgatagagttca 200  Q
    ||||||||||||||||||| | || || ||   ||||||||||| |||||||||||||||||||||| ||  || ||| |||||  |||||||||||||    
T  18400 tgaaggtgagaaaaacacaggtgaaggggg---gttgaattgtgttttctttttcttctcctaaaaccgagtttcctgatcagaagctgatagagttca 18495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 2707 - 2587
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatg----ttgaattgtggtttctttttcttc---tcctaaaactgaagttactgttcagagcctgatag 194  Q
    ||||||||||||||||||||||| ||| |||  |    |||||||||| || ||||||||||   | ||   |||||||| ||||||||||  | |||||    
T  2707 tgaaggtgagaaaaacacaagaggggggggggggggggttgaattgtgtttgctttttcttcgttttctcctactgaagtcactgttcagaagcagatag 2608  T
Q  195 agttcagcttctgaagtgatg 215  Q
    |||||||||||||||||||||    
T  2607 agttcagcttctgaagtgatg 2587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 22260 - 22321
Alignment:
Q  150 ctttttcttctcctaaaactgaagttactgttcagagcctgatagagttcagcttctgaagt 211  Q
    |||||||||||||||||||||||   ||||||||||  || |||||||||| ||||||||||    
T  22260 ctttttcttctcctaaaactgaaaccactgttcagatgctaatagagttcaacttctgaagt 22321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 9921 - 9989
Alignment:
Q  105 aggtgagaaaaacacaag-agagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaa 172  Q
    |||||||||||||||||| | |||| |||  |||||||| || ||||||||||||||| ||||||||||    
T  9921 aggtgagaaaaacacaaggaaaggggggggggttgaattttgttttctttttcttctcttaaaactgaa 9989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0398
Description:

Target: scaffold0398; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 13360 - 13307
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttctt 158  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| ||||||||||||    
T  13360 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttctt 13307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 2987 - 2930
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttc 159  Q
    ||||||||||||||||||||||| ||| |||  ||||||||||| |  ||||||||||    
T  2987 tgaaggtgagaaaaacacaagaggggggggggggttgaattgtgttagctttttcttc 2930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1507 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1507
Description:

Target: scaffold1507; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 306 - 254
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  306 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 321 - 269
Alignment:
Q  102 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 157  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  321 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 269  T

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