View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21551_low_5 (Length: 526)
Name: NF21551_low_5
Description: NF21551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21551_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 35399136 - 35398773
Alignment:
| Q |
20 |
agagagaacttacagatttggcggcttggccacttccagtagcaacatcccaaacaaggttgtgagagggagttttagaagctataaattgaaagagttg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35399136 |
agagagaacttacagatttggcggcttggccacttccagtagcaacatcccaaacaaggttgtgagagggagttttagaagctatgaattgaaagagttg |
35399037 |
T |
|
| Q |
120 |
tggtggataacttggccttgcatctgcgtattcctttccctgattcacaaaaagctctgcc--atatctatagctctatttgatttctccaatcaccacg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35399036 |
tggtggataacttggccttgcatctgcgtattcctttccctgattcacaaaaagctctgccatatatctatagctctatttgatttctccaatcaccacg |
35398937 |
T |
|
| Q |
218 |
ctgcactagtatttat-----aaaatcacttaaattgtagtatctttattctattatgacatatagcatgaaatcattcacttgagtttgggtggccaaa |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35398936 |
ctgcactagtatttataaaaaaaaatcacttaaattgtagtatctttattctattatgacatatagcatgaaatcattcacttgagtttgggtggccaaa |
35398837 |
T |
|
| Q |
313 |
accaatttcgattacaatagtttgtttgtattctcattttccaggttacatcctgataggtggc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35398836 |
accaatttcgattacaatagtttgtttgtattctcattttccaggttacatcctgataggtggc |
35398773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 35401864 - 35401662
Alignment:
| Q |
20 |
agagagaacttacagatttggcggcttggccacttccagtagcaacatcccaaacaaggttgtgagagggagttttagaagctataaattgaaagagttg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35401864 |
agagagaacttacagatttggcggcttggccacttccagtagcaacatcccaaacaaggttgtgagagggagttttagaagctatgaattgaaagagttg |
35401765 |
T |
|
| Q |
120 |
tggtggataacttggccttgcatctgcgtattcctttccctgattcacaaaaagctctgccatatctatagctctatttgatttctccaatcaccacgct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| ||| | |
|
|
| T |
35401764 |
tggtggataacttggccttgcatctgcgtattcctttccctgattcacaaaaagctctgccatctctataactc--tttgatttctccaatcactacgtt |
35401667 |
T |
|
| Q |
220 |
gcact |
224 |
Q |
| |
|
||||| |
|
|
| T |
35401666 |
gcact |
35401662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 36206513 - 36206670
Alignment:
| Q |
31 |
acagatttggcggcttggccacttccagtagcaacatcccaaacaaggttgtgagagggagttttagaagctataaattgaaagagttgtggtggataac |
130 |
Q |
| |
|
|||||||||| ||||| |||||||| || ||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
36206513 |
acagatttgggagcttgtccacttccggtggcaacgtcccaaacgaggttgtgagagggagttttagaagctatgaattggaagagttgtggtggataac |
36206612 |
T |
|
| Q |
131 |
ttggccttgcatctgcgtattcctttccctgattcacaaaaagctctgccatatctat |
188 |
Q |
| |
|
|||||||||||| || |||||| || ||||||||||| |||| |||||||| ||||| |
|
|
| T |
36206613 |
ttggccttgcatttgaatattcccttgcctgattcacataaagttctgccatctctat |
36206670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 36210280 - 36210437
Alignment:
| Q |
31 |
acagatttggcggcttggccacttccagtagcaacatcccaaacaaggttgtgagagggagttttagaagctataaattgaaagagttgtggtggataac |
130 |
Q |
| |
|
||||||||||| |||||||| |||| || || || |||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
36210280 |
acagatttggcagcttggccggttcctgtggccacgtcccaagcaaggtcgtgagagggagttttagaagctatgaattggaagagttgtggtggataac |
36210379 |
T |
|
| Q |
131 |
ttggccttgcatctgcgtattcctttccctgattcacaaaaagctctgccatatctat |
188 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| ||||| |||||||||| ||||| |
|
|
| T |
36210380 |
ttggccttgaatctgcatattcctttccctgtttcgcaaaatgctctgccatttctat |
36210437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 457 - 510
Target Start/End: Complemental strand, 35398701 - 35398647
Alignment:
| Q |
457 |
ccagctagctagatgcatcactacttttttagcgacaattc-tttctatcatata |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35398701 |
ccagctagctagatgcatcactacttttttagcgacaattcttttctatcatata |
35398647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University