View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21551_low_6 (Length: 438)
Name: NF21551_low_6
Description: NF21551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21551_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 41343900 - 41344155
Alignment:
| Q |
1 |
tcttaaccccaaaatcacaggtttttctcactgttgaggaacaacaattatgtgtaactatgttcctagctttggcaatagttaaagaaggcagagaaca |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41343900 |
tcttaaccccaaaatcccaggtttttctcactgttaaggaacaacaatcacgtgtaactatgttcctagctttggtaatagttaaagaaggcagagaaca |
41343999 |
T |
|
| Q |
101 |
ggaaactaaagcttccatagttatagtatcacttaattaacaactaaaatccaaactctttttcatcttacaaaattcacaataataacaagat---att |
197 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
41344000 |
gcaaactaaagcttccatagt------atcacttaattaacaactaaaatccaa-ctctttttcatcaaacaaaattcacaacaataacaagatgttatt |
41344092 |
T |
|
| Q |
198 |
atatgaaaaagaggctacgtgggctttttcagctcacagtctcacggccccacgcagccacac |
260 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41344093 |
atatgaaaaagaggctacgtggactttttcagctcacagtctcacggccccacgcagccacac |
41344155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 429
Target Start/End: Original strand, 41344218 - 41344324
Alignment:
| Q |
324 |
ggggaataatttctaactcttataaagtattcatattttgattaac-annnnnnnnnattgaattggaatccagaagtgtgttcctccttaaaatttaaa |
422 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||| |||| || |
|
|
| T |
41344218 |
ggggaataatttctaacccttataaagtattcatattttgattaacaattttattttattgaattgaaatccggaagtgtgttcctccttaagatttgaa |
41344317 |
T |
|
| Q |
423 |
gtttgat |
429 |
Q |
| |
|
||||||| |
|
|
| T |
41344318 |
gtttgat |
41344324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University