View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21551_low_9 (Length: 349)
Name: NF21551_low_9
Description: NF21551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21551_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 31726636 - 31726962
Alignment:
| Q |
24 |
tcgagctcccactttctgttccaaagttggcactgcgtcgcaaggaagttcttgagttcgacatatatcataattccaaacacacactaggaaatcttat |
123 |
Q |
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| T |
31726636 |
tcgagctcccactttttgttccaaagttggcactgtgtcgcaaggaagttcttgagttcgacatatatcataattccaaacacacactaggaaatattat |
31726735 |
T |
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| Q |
124 |
ccctctaaacaacaataatcatctcaactcatcatcaccactaagaaatcattatttttctagaag-gnnnnnnnnnnnnnntctccttcaccttctata |
222 |
Q |
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| T |
31726736 |
ccctctaaacaacaataatcatctcaactcatcatcaccactaagaaatcattatttttctagaagaaaaaaaatatatatatctccttcaccttctata |
31726835 |
T |
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| Q |
223 |
atgatctcaactatatggaattgggttgtaatcattattatgttaaaaatcatcaagtgtacttccttgtaagagattgaagaccaacaacatttcttca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31726836 |
atgatctcaactatatggaattgggttgtaatcattattatgttaaaaatcatcaagtgtacttccttgtaagagattgaagaccaacaacatttcttca |
31726935 |
T |
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| Q |
323 |
ttgccatcgtgttaggaaagaaagatc |
349 |
Q |
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| T |
31726936 |
ttgccatcgtgttaggaaagaaagatc |
31726962 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 34522974 - 34523012
Alignment:
| Q |
289 |
ttgtaagagattgaagaccaacaacatttcttcattgcc |
327 |
Q |
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| T |
34522974 |
ttgtaagagattgaagactaataacatttcttcattgcc |
34523012 |
T |
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