View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21552_high_3 (Length: 220)
Name: NF21552_high_3
Description: NF21552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21552_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33235276 - 33235495
Alignment:
| Q |
1 |
ctttttcttttcttctatgcttcaaatcactccttaaaatcatcacatcattttaaattgcggttgcagtcgcagttacgttgcaagtcttgatattgca |
100 |
Q |
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| T |
33235276 |
ctttttcttttcttctatgcttcaaatcactccttaaaatcatcacatcattttaaattgcggttgcagtcgcagttacgttgcaagtcttgatattgca |
33235375 |
T |
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| Q |
101 |
gtaaaatactatcgatgtggcagcaattgcagttgcgacgctgttgtagaaatctctaaaacttttatattgcgcaattgtgtttgcagaccccaattta |
200 |
Q |
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| T |
33235376 |
gtaaaatacgatcgatgtggcagcaattgcagttgcgacgctgttgtagaaatctctaaaacttttatattgcgcaattgtggttgcagaccgcaattta |
33235475 |
T |
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| Q |
201 |
aaattatgcattattgtttt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
33235476 |
aaattatgcattattgtttt |
33235495 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 31165822 - 31165766
Alignment:
| Q |
45 |
acatcattttaaattgcggttgcagtcgcagttacgttgcaagtcttgatattgcag |
101 |
Q |
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||||| ||||||||||| | || ||||||||||||| ||||| |||| ||||||||| |
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| T |
31165822 |
acatcgttttaaattgcagctgaagtcgcagttacgctgcaaatctttatattgcag |
31165766 |
T |
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