View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21552_low_2 (Length: 248)

Name: NF21552_low_2
Description: NF21552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21552_low_2
NF21552_low_2
[»] chr8 (40 HSPs)
chr8 (8-248)||(29023067-29023309)
chr8 (27-116)||(25698018-25698107)
chr8 (27-116)||(44926802-44926891)
chr8 (12-101)||(3097249-3097339)
chr8 (8-109)||(42148973-42149075)
chr8 (40-101)||(27649722-27649783)
chr8 (13-116)||(41289102-41289206)
chr8 (8-101)||(28425511-28425605)
chr8 (27-101)||(36114099-36114173)
chr8 (8-116)||(4941820-4941929)
chr8 (27-115)||(8124933-8125021)
chr8 (14-109)||(33627079-33627175)
chr8 (27-98)||(3467512-3467583)
chr8 (31-98)||(41981136-41981203)
chr8 (13-103)||(43550865-43550956)
chr8 (41-103)||(6399181-6399243)
chr8 (8-90)||(42143403-42143486)
chr8 (27-101)||(34342912-34342985)
chr8 (27-91)||(24897646-24897710)
chr8 (41-101)||(38152247-38152307)
chr8 (41-103)||(440262-440324)
chr8 (13-102)||(22936837-22936927)
chr8 (65-103)||(26243065-26243103)
chr8 (45-103)||(40742370-40742428)
chr8 (42-103)||(16915035-16915096)
chr8 (40-101)||(45147322-45147383)
chr8 (64-116)||(3619164-3619216)
chr8 (68-103)||(37458403-37458438)
chr8 (13-103)||(40742098-40742189)
chr8 (45-99)||(11126494-11126548)
chr8 (64-98)||(24297687-24297721)
chr8 (42-103)||(26125546-26125607)
chr8 (12-72)||(26243129-26243190)
chr8 (64-99)||(41891915-41891950)
chr8 (65-103)||(35615683-35615721)
chr8 (43-116)||(31246390-31246463)
chr8 (64-116)||(15206657-15206709)
chr8 (63-103)||(26575809-26575849)
chr8 (62-98)||(30081744-30081780)
chr8 (45-101)||(38114421-38114477)
[»] chr5 (38 HSPs)
chr5 (8-248)||(41740629-41740871)
chr5 (27-116)||(32454504-32454593)
chr5 (13-102)||(40885191-40885282)
chr5 (27-101)||(13253138-13253212)
chr5 (13-116)||(3667821-3667925)
chr5 (45-100)||(2430370-2430425)
chr5 (13-103)||(22482169-22482260)
chr5 (13-116)||(35760156-35760260)
chr5 (44-103)||(3060296-3060354)
chr5 (8-92)||(39988003-39988088)
chr5 (15-103)||(40495401-40495489)
chr5 (30-101)||(32030698-32030767)
chr5 (35-98)||(7385996-7386059)
chr5 (13-103)||(27021108-27021199)
chr5 (13-103)||(41834872-41834963)
chr5 (12-101)||(10058056-10058146)
chr5 (45-103)||(33953975-33954033)
chr5 (48-101)||(7714922-7714975)
chr5 (15-98)||(8049094-8049178)
chr5 (35-103)||(16158529-16158597)
chr5 (41-83)||(28869573-28869615)
chr5 (41-103)||(40791139-40791201)
chr5 (41-103)||(42146288-42146350)
chr5 (42-103)||(9275555-9275616)
chr5 (48-101)||(24045813-24045866)
chr5 (45-97)||(5710459-5710511)
chr5 (13-103)||(4292129-4292220)
chr5 (48-103)||(16843518-16843573)
chr5 (42-100)||(2694831-2694889)
chr5 (64-116)||(3747683-3747735)
chr5 (64-108)||(31215467-31215511)
chr5 (42-101)||(7178760-7178819)
chr5 (64-103)||(40979998-40980037)
chr5 (64-109)||(2861611-2861656)
chr5 (42-99)||(41959445-41959502)
chr5 (64-116)||(7071503-7071555)
chr5 (63-103)||(33082423-33082463)
chr5 (40-92)||(34107016-34107068)
[»] chr2 (34 HSPs)
chr2 (8-207)||(23358127-23358329)
chr2 (27-116)||(7472730-7472819)
chr2 (14-120)||(44619104-44619211)
chr2 (13-103)||(9988543-9988634)
chr2 (13-120)||(28127329-28127437)
chr2 (27-101)||(39141526-39141600)
chr2 (13-116)||(2213468-2213572)
chr2 (27-103)||(5916298-5916374)
chr2 (27-103)||(36312252-36312328)
chr2 (45-103)||(14821138-14821196)
chr2 (47-103)||(8170288-8170344)
chr2 (39-103)||(31562753-31562817)
chr2 (8-120)||(2215212-2215323)
chr2 (58-116)||(42516063-42516121)
chr2 (13-97)||(1945081-1945166)
chr2 (45-102)||(25940316-25940373)
chr2 (45-103)||(28261269-28261327)
chr2 (42-103)||(2234902-2234962)
chr2 (42-102)||(7295418-7295478)
chr2 (40-103)||(28641617-28641680)
chr2 (41-104)||(32501960-32502023)
chr2 (13-102)||(7296131-7296221)
chr2 (42-98)||(3602531-3602587)
chr2 (30-90)||(42089592-42089652)
chr2 (64-103)||(3853875-3853914)
chr2 (62-116)||(18511064-18511118)
chr2 (13-98)||(27911386-27911472)
chr2 (13-117)||(26207971-26208076)
chr2 (48-101)||(36548177-36548230)
chr2 (42-98)||(16467066-16467122)
chr2 (42-101)||(25747953-25748012)
chr2 (40-99)||(43436351-43436410)
chr2 (66-103)||(37640236-37640273)
chr2 (27-67)||(2213658-2213698)
[»] chr1 (37 HSPs)
chr1 (8-248)||(291757-291989)
chr1 (27-102)||(43728937-43729012)
chr1 (27-101)||(12247412-12247486)
chr1 (27-116)||(12468190-12468278)
chr1 (30-101)||(35536064-35536135)
chr1 (45-103)||(6464598-6464656)
chr1 (45-103)||(45710039-45710097)
chr1 (12-103)||(36205181-36205273)
chr1 (13-103)||(31223364-31223455)
chr1 (13-103)||(35569247-35569338)
chr1 (13-103)||(42850264-42850355)
chr1 (41-103)||(4369876-4369938)
chr1 (45-103)||(10470580-10470638)
chr1 (41-103)||(13055988-13056050)
chr1 (41-102)||(5410631-5410692)
chr1 (27-104)||(6166099-6166176)
chr1 (13-103)||(20800322-20800413)
chr1 (41-103)||(7826428-7826490)
chr1 (8-101)||(40229510-40229604)
chr1 (13-98)||(48510903-48510989)
chr1 (13-101)||(1199819-1199908)
chr1 (27-102)||(13931614-13931689)
chr1 (45-100)||(25230000-25230055)
chr1 (45-103)||(50977417-50977475)
chr1 (43-116)||(15884203-15884276)
chr1 (30-93)||(9447533-9447596)
chr1 (41-104)||(11023403-11023466)
chr1 (48-103)||(31933717-31933772)
chr1 (42-98)||(25061221-25061277)
chr1 (64-103)||(11051407-11051446)
chr1 (45-103)||(40821815-40821873)
chr1 (40-99)||(26058235-26058294)
chr1 (64-103)||(46033210-46033249)
chr1 (27-98)||(47123381-47123452)
chr1 (41-116)||(50406107-50406182)
chr1 (64-105)||(33226233-33226274)
chr1 (61-109)||(49243099-49243147)
[»] chr7 (39 HSPs)
chr7 (27-116)||(9456079-9456168)
chr7 (27-103)||(48134567-48134643)
chr7 (27-116)||(43737985-43738074)
chr7 (13-99)||(37562561-37562648)
chr7 (41-101)||(34366041-34366101)
chr7 (12-102)||(3342778-3342869)
chr7 (13-103)||(12632114-12632205)
chr7 (46-109)||(47301622-47301685)
chr7 (8-101)||(39391163-39391257)
chr7 (40-101)||(34010329-34010390)
chr7 (13-103)||(3622491-3622582)
chr7 (45-100)||(44967463-44967518)
chr7 (27-101)||(19095926-19095999)
chr7 (13-101)||(47217572-47217661)
chr7 (13-103)||(37639417-37639508)
chr7 (13-103)||(38230055-38230146)
chr7 (41-103)||(3375477-3375539)
chr7 (45-103)||(10372022-10372080)
chr7 (30-98)||(42740384-42740452)
chr7 (27-103)||(43631741-43631817)
chr7 (43-98)||(386543-386597)
chr7 (13-103)||(32205914-32206003)
chr7 (13-98)||(48459702-48459788)
chr7 (41-101)||(34011021-34011082)
chr7 (47-103)||(47021906-47021962)
chr7 (42-116)||(40903228-40903302)
chr7 (65-98)||(37886854-37886887)
chr7 (54-98)||(3750678-3750722)
chr7 (64-103)||(4035921-4035960)
chr7 (40-99)||(32186931-32186990)
chr7 (41-96)||(36920238-36920293)
chr7 (40-99)||(41715648-41715707)
chr7 (43-98)||(43581627-43581682)
chr7 (43-98)||(46541593-46541647)
chr7 (42-100)||(1766415-1766473)
chr7 (43-88)||(12964438-12964483)
chr7 (45-78)||(37008414-37008447)
chr7 (43-116)||(39634227-39634300)
chr7 (13-92)||(42904551-42904631)
[»] chr6 (14 HSPs)
chr6 (27-116)||(13739159-13739248)
chr6 (27-116)||(13744659-13744748)
chr6 (27-101)||(31132432-31132506)
chr6 (13-116)||(29409295-29409399)
chr6 (27-98)||(10826062-10826133)
chr6 (13-103)||(16442394-16442485)
chr6 (13-103)||(16548105-16548196)
chr6 (42-103)||(6208136-6208197)
chr6 (60-103)||(17830090-17830133)
chr6 (12-103)||(33899048-33899140)
chr6 (41-103)||(21455848-21455910)
chr6 (42-116)||(699511-699584)
chr6 (64-116)||(1312535-1312587)
chr6 (41-98)||(7215546-7215603)
[»] chr4 (49 HSPs)
chr4 (27-116)||(43781577-43781666)
chr4 (13-117)||(51922877-51922982)
chr4 (27-109)||(30842077-30842159)
chr4 (27-109)||(48407756-48407838)
chr4 (13-117)||(13183094-13183199)
chr4 (13-116)||(29149351-29149455)
chr4 (13-103)||(16566256-16566347)
chr4 (45-104)||(28986971-28987030)
chr4 (13-103)||(39636736-39636827)
chr4 (13-103)||(48550471-48550562)
chr4 (45-103)||(14072454-14072512)
chr4 (13-97)||(6138664-6138749)
chr4 (41-102)||(14564219-14564280)
chr4 (30-103)||(15603311-15603384)
chr4 (13-117)||(42944942-42945047)
chr4 (13-116)||(49136460-49136564)
chr4 (44-103)||(9889410-9889469)
chr4 (44-103)||(9893662-9893721)
chr4 (42-117)||(26651922-26651997)
chr4 (41-103)||(4954124-4954186)
chr4 (45-103)||(32238135-32238193)
chr4 (45-103)||(54152996-54153054)
chr4 (13-101)||(2175191-2175280)
chr4 (13-116)||(19592275-19592379)
chr4 (27-98)||(43772182-43772253)
chr4 (41-103)||(31520443-31520505)
chr4 (42-103)||(30887227-30887288)
chr4 (42-102)||(6505153-6505213)
chr4 (41-101)||(48908228-48908288)
chr4 (42-102)||(55638861-55638921)
chr4 (13-103)||(46830113-46830204)
chr4 (41-103)||(26426187-26426249)
chr4 (41-103)||(54735723-54735785)
chr4 (64-99)||(5025484-5025519)
chr4 (42-109)||(48257048-48257115)
chr4 (27-98)||(49519686-49519757)
chr4 (42-116)||(56241909-56241983)
chr4 (43-116)||(38305949-38306022)
chr4 (15-103)||(38693999-38694088)
chr4 (40-116)||(13167463-13167539)
chr4 (13-99)||(14054806-14054893)
chr4 (60-91)||(15619579-15619610)
chr4 (27-98)||(25312671-25312742)
chr4 (64-103)||(45106359-45106398)
chr4 (41-103)||(14075966-14076028)
chr4 (64-101)||(50523350-50523387)
chr4 (42-99)||(54655205-54655262)
chr4 (75-103)||(33721971-33721999)
chr4 (13-92)||(46926010-46926090)
[»] scaffold0369 (1 HSPs)
scaffold0369 (13-116)||(8402-8506)
[»] chr3 (41 HSPs)
chr3 (27-103)||(20813112-20813188)
chr3 (15-103)||(10853313-10853402)
chr3 (27-109)||(42318290-42318372)
chr3 (27-109)||(38125500-38125582)
chr3 (15-116)||(53179802-53179903)
chr3 (12-102)||(10334105-10334196)
chr3 (13-103)||(38172351-38172442)
chr3 (41-103)||(15511448-15511510)
chr3 (45-103)||(16246171-16246229)
chr3 (45-103)||(31618964-31619022)
chr3 (45-103)||(35425300-35425358)
chr3 (45-103)||(48189518-48189576)
chr3 (41-103)||(53074869-53074931)
chr3 (13-116)||(26519617-26519721)
chr3 (12-103)||(44224728-44224820)
chr3 (45-100)||(8424806-8424861)
chr3 (41-103)||(22736947-22737009)
chr3 (45-103)||(30811608-30811666)
chr3 (41-103)||(52966882-52966944)
chr3 (15-103)||(3348209-3348298)
chr3 (13-101)||(23207112-23207199)
chr3 (42-103)||(23496290-23496351)
chr3 (13-102)||(31084175-31084264)
chr3 (45-103)||(44939491-44939549)
chr3 (40-101)||(32357479-32357540)
chr3 (13-103)||(38340772-38340862)
chr3 (42-116)||(45423842-45423916)
chr3 (27-96)||(21224963-21225032)
chr3 (59-96)||(55087593-55087630)
chr3 (12-103)||(35930704-35930796)
chr3 (41-92)||(30810018-30810069)
chr3 (49-103)||(14959685-14959739)
chr3 (64-98)||(37698485-37698519)
chr3 (63-103)||(44610311-44610350)
chr3 (64-103)||(30811290-30811329)
chr3 (64-99)||(53078328-53078363)
chr3 (41-103)||(25847999-25848060)
chr3 (45-103)||(50664725-50664782)
chr3 (42-103)||(41459039-41459099)
chr3 (41-98)||(42475680-42475737)
chr3 (63-103)||(33329436-33329476)
[»] scaffold0005 (1 HSPs)
scaffold0005 (41-102)||(253095-253156)
[»] scaffold0381 (1 HSPs)
scaffold0381 (44-103)||(9077-9136)
[»] scaffold0007 (1 HSPs)
scaffold0007 (45-103)||(29199-29257)
[»] scaffold0983 (1 HSPs)
scaffold0983 (8-99)||(2307-2399)
[»] scaffold0217 (1 HSPs)
scaffold0217 (42-102)||(2101-2161)
[»] scaffold0041 (1 HSPs)
scaffold0041 (42-116)||(46716-46790)
[»] scaffold0394 (1 HSPs)
scaffold0394 (45-103)||(5903-5966)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 29023309 - 29023067
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaa 106  Q
    |||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29023309 tgagatgaattggtttatatttggatacacttgtttaaaattgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtaa 29023210  T
Q  107 aataaccaaacacctctaaacatagaatttcttatattttgtcnnnnnnntataacaattatatcacatttgccaaagctgtattttttaa-gtgtagtg 205  Q
    ||| |||||||||| ||||| ||||||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||| ||||||||    
T  29023209 aatgaccaaacacccctaaaaatagaatttcttatattttgtcaaaaaaaaaaaacaattatatcacatttgccaaagctgtattttttaacgtgtagtg 29023110  T
Q  206 atnnnnnnnntcacatctataacaaaaataactgcaacccaac 248  Q
    ||        |||||| ||||||||||||||||||||||||||    
T  29023109 ataaaaagaatcacatttataacaaaaataactgcaacccaac 29023067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 25698018 - 25698107
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  25698018 ttggataaacttatttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatattaaataaccaaa 25698107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 44926891 - 44926802
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  44926891 ttggatacacttgtttaaaagtgattcttatgagttgatgttatttggatagtttgaatcaaaattaattttgaatgtaaaatgaccaaa 44926802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 3097249 - 3097339
Alignment:
Q  12 atgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||||||| |||||||| |||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3097249 atgaattgatttatgtttggatatactcacttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 3097339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 42149075 - 42148973
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaa 106  Q
    |||| ||||||| |||||||| ||||| |||| |||||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||||| ||    
T  42149075 tgaggtgaattgatttatgtttggatagacttatttaaaagtgattcgtatgagttgatgttgtttagataatttgaatcaaaattgattttgaatgtaa 42148976  T
Q  107 aat 109  Q
    |||    
T  42148975 aat 42148973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 27649783 - 27649722
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27649783 tttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 27649722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 41289102 - 41289206
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| ||||   ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  41289102 tgaattgatttatgtttggatacactttactaaaagtgattcttataggttgatgttgtttggatagtttgaatcaaaattgattttgaatgcaaaatta 41289201  T
Q  112 ccaaa 116  Q
    |||||    
T  41289202 ccaaa 41289206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 28425511 - 28425605
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||| ||||||| |||||||| ||||| ||||  ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28425511 tgaggtgaattgatttatgtttggatacactttcttacaagtgattcttatgagttgacgttgtttggatagtttgaatcaaaattgattttgaa 28425605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 36114099 - 36114173
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| ||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  36114099 ttggatacactcgtttaaaagtgattcttatgagttgatattgtttggataatttgaatcaaaattgattttgaa 36114173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 4941820 - 4941929
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaa 106  Q
    |||| ||||||| |||||||| ||||| | || |||||||| |||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||| ||    
T  4941820 tgaggtgaattgatttatgtttggataaaattatttaaaagcgattcttatgagttgatgttgtttgaataatttgaattaaaattgattttgaatgtaa 4941919  T
Q  107 aataaccaaa 116  Q
    ||| ||||||    
T  4941920 aatgaccaaa 4941929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 8125021 - 8124933
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaa 115  Q
    ||||||| |||  ||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||    
T  8125021 ttggatacactcatttaaaagtgattcttaggagttgaagttgtttggatagtttgaatcaaaattgattttaaatggataatgaccaa 8124933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 33627079 - 33627175
Alignment:
Q  14 gaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaat 109  Q
    |||||| |||||||| ||||| ||||   ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  33627079 gaattgatttatgtttggatacactttactaaaagtgattcttatgagttaatgttgtttggatagtttgaatcaaaatcgattttgaatgtaaaat 33627175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 3467583 - 3467512
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||||| || ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||    
T  3467583 ttggatatatttatttaaaagtgattcttatgaattgatgttggttggatagtttgaatcaaaattgatttt 3467512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 41981203 - 41981136
Alignment:
Q  31 atatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  41981203 atatacttatctaaaagtgattcttatgagttgatgttgtttggatactttgaatcaaaattgatttt 41981136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 43550956 - 43550865
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  |||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||||    
T  43550956 tgaattgatttatgtttggatacactttattaaaagtgattcttgtgggttgatgttgtttggataatttgaatcaaaattgattttgaatg 43550865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 6399181 - 6399243
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  6399181 ttaaaagtgattcttatgagttgatgttgtttggataattttaatcaaaattgattttgaatg 6399243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 42143403 - 42143486
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaa 90  Q
    |||| ||||||| |||||||| ||||| |||| ||||||||||||| ||||||||||| |||||||||||| |||||| |||||    
T  42143403 tgaggtgaattgatttatgtttggataaacttatttaaaagtgattcttatgagttgacgttgtttggataatttgaaacaaaa 42143486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 34342912 - 34342985
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| | || ||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  34342912 ttggataaatttatttaaaagtgattcttat-agtggatgttgtttggataatttgaatcaaaattgattttgaa 34342985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 24897646 - 24897710
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaat 91  Q
    ||||||| | || ||||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  24897646 ttggatacatttatttaaaattgattcttatgagttgatgttgtttggataatttgaatcaaaat 24897710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 38152247 - 38152307
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||||| ||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  38152247 ttaaaaatgattcttatgagttgatgtggtttggatactttaaatcaaaattgattttgaa 38152307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 440262 - 440324
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||| ||||| ||||||||| | ||||||||||||| ||||||||||| ||||||||||||    
T  440262 ttaaaaatgattcttatgagttaacgttgtttggatagattgaatcaaaactgattttgaatg 440324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 22936837 - 22936927
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    ||||||| |||||||| ||||| ||||  ||| |||||||| || ||  ||||||||||||||||||||||||||||| ||| ||||||||    
T  22936837 tgaattgatttatgtttggatacactttattagaagtgattcttgtggattgatgttgtttggatagtttgaatcaaatttggttttgaat 22936927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 26243103 - 26243065
Alignment:
Q  65 tgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26243103 tgttgtttggatagtttgaatcaaaattgattttgaatg 26243065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 40742370 - 40742428
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| ||||||||||||| |||||||||| ||| |||||||||||||||| ||||    
T  40742370 aagtgattcttatgagttgatgatgtttggatattttaaatcaaaattgattttaaatg 40742428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 16915096 - 16915035
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||| ||||||||| ||| ||||||| | ||||| ||||||||||||||||||||    
T  16915096 taaaagtgattcttatgagttaatgatgtttggttggtttgtatcaaaattgattttgaatg 16915035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 45147322 - 45147383
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||||||||| |||| ||||||| ||||||| |||  ||||||||||||||||||||||    
T  45147322 tttaaaagtgattcttataagttgatattgtttgaataacttgaatcaaaattgattttgaa 45147383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 3619164 - 3619216
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||||||||||||||||||||||||||||||| |||| | ||| ||||||    
T  3619164 atgttgtttggatagtttgaatcaaaattgattttaaatgtataattaccaaa 3619216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 37458403 - 37458438
Alignment:
Q  68 tgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  37458403 tgtttggatagtttgaatcaaaattgattttgaatg 37458438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 40742189 - 40742098
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||   ||||| ||||| |||||||||||| ||||||||||  ||||||| ||| |||||||||||||    
T  40742189 tgaattgatttatgtttggatacactttaataaaattgattcttatgagttgatattgtttggatgatttgaatgaaacttgattttgaatg 40742098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 11126548 - 11126494
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttg 99  Q
    |||||||| | |||||||  |||||||||||||||||||||||||||||| ||||    
T  11126548 aagtgattttcatgagtttgtgttgtttggatagtttgaatcaaaattgagtttg 11126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 24297687 - 24297721
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||||||||||||||||||||||||||||||||    
T  24297687 atgttgtttggatagtttgaatcaaaattgatttt 24297721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 26125607 - 26125546
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||| ||||| ||||||||||||  ||||||||  |||| |||||||||||||||||||||    
T  26125607 taaaaatgattcttatgagttgataatgtttggacggtttaaatcaaaattgattttgaatg 26125546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 26243190 - 26243129
Alignment:
Q  12 atgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgttt 72  Q
    |||||||| |||||||| ||||||| |||||||||||||||| |||||||||| || |||||    
T  26243190 atgaattgatttatgtttggatataattgtttaaaagtgattcttatgagttggtgatgttt 26243129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 41891915 - 41891950
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttg 99  Q
    |||||||||||| |||||||||||||||||||||||    
T  41891915 atgttgtttggacagtttgaatcaaaattgattttg 41891950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 35615721 - 35615683
Alignment:
Q  65 tgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  35615721 tgttgtttggatagtttggctcaaaattgattttgaatg 35615683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 31246390 - 31246463
Alignment:
Q  43 aaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    |||||||||| |||| | || ||||||||||||||  ||| ||||||||||||||| |||| | ||| ||||||    
T  31246390 aaaagtgattcttataaattcatgttgtttggataacttggatcaaaattgattttaaatgcataattaccaaa 31246463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 15206709 - 15206657
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    |||||||||||||||||||   |||||||||||||||||| | ||| ||||||    
T  15206709 atgttgtttggatagtttggcccaaaattgattttgaatgcataattaccaaa 15206657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 26575849 - 26575809
Alignment:
Q  63 gatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||||||||||  |||||||||| |||||||||    
T  26575849 gatgttgtttggatagttttgatcaaaattgcttttgaatg 26575809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 30081744 - 30081780
Alignment:
Q  62 tgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||||||||||||||||||  ||||||||||||||    
T  30081744 tgatgttgtttggatagtttgtttcaaaattgatttt 30081780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 38114477 - 38114421
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||||||| ||||||||||| |||||||| ||| || |||  |||||||||||||||    
T  38114477 aagtgattcttatgagttgaggttgtttgaatatttcgaacaaaaattgattttgaa 38114421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 41740629 - 41740871
Alignment:
Q  8 tgagatgaattggtttatgttgga-tatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaa 106  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  41740629 tgagatgaattggtttatgtttgaatacacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttaaatcaaaattgattttgaatgtaa 41740728  T
Q  107 aataaccaaacacctctaaacatagaatttcttatattttgtcnnnnnnntataacaattatatcacatttgccaaagctgtattttttaa-gtgtagtg 205  Q
    ||| |||||||||| ||||||||||||||||||||||||||||       || || |||||||||||||||| |||||||||||||||||| ||||||||    
T  41740729 aatgaccaaacacccctaaacatagaatttcttatattttgtcaaaaaaata-aaaaattatatcacatttgtcaaagctgtattttttaacgtgtagtg 41740827  T
Q  206 at-nnnnnnnntcacatctataacaaaaataactgcaacccaac 248  Q
    ||         |||||| ||||||||||||||||||||||||||    
T  41740828 ataaaaaaaaatcacatttataacaaaaataactgcaacccaac 41740871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 32454593 - 32454504
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  32454593 ttggatacacttgtttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtaaaatgaccaaa 32454504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 40885282 - 40885191
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtga-ttgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    ||||||| |||||||| ||| | |||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40885282 tgaattgatttatgtttggacacacttgtttaaaagtgagtttttatgagttgatattgtttggatagtttgaatcaaaattgattttgaat 40885191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 13253138 - 13253212
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| |||  ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  13253138 ttggatacactcatttaaaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttgaa 13253212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 3667925 - 3667821
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| |||   |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||| |    
T  3667925 tgaattgatttatgtttggatacactcaattaaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaaatgtaaaatga 3667826  T
Q  112 ccaaa 116  Q
    |||||    
T  3667825 ccaaa 3667821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 2430370 - 2430425
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2430370 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttga 2430425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 22482260 - 22482169
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  ||||||||||||  | || ||||||||||||||||||||||||||||||||||||||||||||    
T  22482260 tgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatg 22482169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 35760260 - 35760156
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| |||   |||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||| |    
T  35760260 tgaattgatttatgtttggatacactcaattaaaactgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaaatgtaaaatga 35760161  T
Q  112 ccaaa 116  Q
    |||||    
T  35760160 ccaaa 35760156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 3060296 - 3060354
Alignment:
Q  44 aaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3060296 aaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattgattttgaatg 3060354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 39988003 - 39988088
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaatt 92  Q
    |||| ||||||| |||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||  ||| ||||||||||    
T  39988003 tgaggtgaattgatttatgtttggatacacttatttaaaagtgattcttatgagttgatgttgtttggatgatttaaatcaaaatt 39988088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 40495401 - 40495489
Alignment:
Q  15 aattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||| |||||||| ||||| |||| ||||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||| |||||    
T  40495401 aattgatttatgtttggatacacttttttaaaagtgatttttatgagttgat-ttgtttgaatagtttaaatcaaaattgatttggaatg 40495489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 32030767 - 32030698
Alignment:
Q  30 gatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||||| || |||||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||    
T  32030767 gatatacttattcaaaagtgattcttatg--ttgatgttgtttgaatagtttgaatcaaaattgattttgaa 32030698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 7385996 - 7386059
Alignment:
Q  35 acttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||    
T  7385996 acttatttaaaagtgattcttatgagttgatgttgtttggataatttaaatcaaaattgctttt 7386059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 27021199 - 27021108
Alignment:
Q  13 tgaattggtttatgttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggat-agtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| | ||||||   |||||||||||| |||  |||||||||||||||||| || ||||||||||||||||||||||||    
T  27021199 tgaattgatttatgtttggtatactcacttaaaagtgattcttagaagttgatgttgtttggataagattgaatcaaaattgattttgaatg 27021108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 41834963 - 41834872
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||   || |||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||    
T  41834963 tgaattgatttatgtttggatacactttactagaagtgattcttacgaattgatgttgtttggatagtttgaatgaaaattgattttgaatg 41834872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 10058146 - 10058056
Alignment:
Q  12 atgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||||||| |||||||| ||||| ||||   || |||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||    
T  10058146 atgaattgatttatgtttggatacactttactagaagtgattcttacgaattgatgttgtttggatagtttgaatgaaaattgattttgaa 10058056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 33953975 - 33954033
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  33953975 aagtgattctgatgagttgatgttgttcggatagtttgaatcaaaattaattttgaatg 33954033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 7714975 - 7714922
Alignment:
Q  48 tgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  7714975 tgattcttataagttgatgttgtttggatagtttgaattaaaattgattttgaa 7714922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 8049094 - 8049178
Alignment:
Q  15 aattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||| |||||||| ||||| |||| ||||||||||||| |||||||||| ||||||||||||  ||| ||||||||||| ||||    
T  8049094 aattgatttatgtttggatacacttatttaaaagtgattcttatgagttgttgttgtttggatgatttaaatcaaaattgctttt 8049178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 16158529 - 16158597
Alignment:
Q  35 acttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||| ||||||||||||| ||| || |||||||| |||||||  |||||||||||||||||||||||||    
T  16158529 acttttttaaaagtgattcttaggaattgatgttctttggatgatttgaatcaaaattgattttgaatg 16158597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 28869573 - 28869615
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttga 83  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  28869573 ttaaaagtgattcttatgagttgatgttgtttggatagtttga 28869615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 40791139 - 40791201
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| || ||||||||| |||||||||||  ||||||||||||||||| ||||||    
T  40791139 ttaaaagtgattcttttgagttgatattgtttggatacattgaatcaaaattgattgtgaatg 40791201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 42146350 - 42146288
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| || ||||||||| |||||||||||  ||||||||||||||||| ||||||    
T  42146350 ttaaaagtgattcttttgagttgatattgtttggatacattgaatcaaaattgattgtgaatg 42146288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 9275555 - 9275616
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||| ||||| |||||||||||||||||||||||  ||||||| ||| |||||||||||||    
T  9275555 taaaattgattcttatgagttgatgttgtttggatgatttgaatgaaacttgattttgaatg 9275616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 24045866 - 24045813
Alignment:
Q  48 tgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||| ||||| |||||||||||||||||| ||||||| |||||||||||||||    
T  24045866 tgatttttatgggttgatgttgtttggataatttgaattaaaattgattttgaa 24045813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 5710459 - 5710511
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattt 97  Q
    |||||||| |||||||| ||| ||||||||||||||||||| |||||||||||    
T  5710459 aagtgatttttatgagtagatattgtttggatagtttgaataaaaattgattt 5710511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 4292220 - 4292129
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  ||| |||||||| || |  |||||| ||||||||||| |||||||||||||| ||||||||||    
T  4292220 tgaattgatttatgtttggatacacttaattagaagtgattcttgttggttgatattgtttggataatttgaatcaaaattaattttgaatg 4292129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 16843573 - 16843518
Alignment:
Q  48 tgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||| ||| |||||||||||||||||||||||| ||| | |||||||||||||||    
T  16843573 tgatttttacgagttgatgttgtttggatagtttaaatgataattgattttgaatg 16843518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 2694831 - 2694889
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttga 100  Q
    ||||||||||| |||| | |||||| |||||| ||| ||||||||||||||||||||||    
T  2694831 taaaagtgattcttatcaattgatgatgtttgtataatttgaatcaaaattgattttga 2694889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 3747683 - 3747735
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    |||||||||||||||||| ||||||||||||||||  ||| ||||| ||||||    
T  3747683 atgttgtttggatagttttaatcaaaattgattttacatgtaaaattaccaaa 3747735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 31215467 - 31215511
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatggaaaa 108  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||    
T  31215467 atgttgttcggatagtttgaatcaaaattgcttttggatggaaaa 31215511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 7178819 - 7178760
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||| ||||| |||| | || ||||||||||| |||||||||||||||||| |||||||    
T  7178819 taaaattgattcttatcaatttatgttgtttgggtagtttgaatcaaaattgcttttgaa 7178760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 40980037 - 40979998
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  40980037 atgttgtttggatagttttgatcaaaattgattttgaatg 40979998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 2861656 - 2861611
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatggaaaat 109  Q
    |||||||||| ||| |||| |||||||||||||||||||| |||||    
T  2861656 atgttgtttgaataatttggatcaaaattgattttgaatgcaaaat 2861611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 41959502 - 41959445
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttg 99  Q
    ||||||||||| ||||||||| |||||||||  ||||||||||  | |||||||||||    
T  41959502 taaaagtgattcttatgagttaatgttgttttcatagtttgaaatagaattgattttg 41959445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 7071503 - 7071555
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||||||||||||||  |||||||||| ||||||||| | ||| ||||||    
T  7071503 atgttgtttggatagttttgatcaaaattgtttttgaatgtataattaccaaa 7071555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 33082423 - 33082463
Alignment:
Q  63 gatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||||||||||  |||||||||| |||||||||    
T  33082423 gatgttgtttggatagttttgatcaaaattgcttttgaatg 33082463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 34107016 - 34107068
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaatt 92  Q
    ||||||||| ||| |||||| || |||||||||| |||| |||||||||||||    
T  34107016 tttaaaagtaattcttatgaattaatgttgtttgaataggttgaatcaaaatt 34107068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 23358329 - 23358127
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaa 106  Q
    ||||||||| | ||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  23358329 tgagatgaaatagtttatgtttggatacacttgtttaaaagtgattgtgatgagttaatgttgtttggatagtttgaatcaaaattgattttgaatgtaa 23358230  T
Q  107 aataaccaaacacctctaaacatagaatttcttatattttgtc-nnnnnnntataacaattatatcacatttgccaaagctgtattttttaa-gtgtagt 204  Q
    ||| |||||||||| |||||| |||||||| || ||||||  |         | |||||||||||||||||| ||||||||||||||||||| |||||||    
T  23358229 aatgaccaaacacccctaaacgtagaatttgttgtatttttccaacaaaaaaaaaacaattatatcacatttaccaaagctgtattttttaacgtgtagt 23358130  T
Q  205 gat 207  Q
    |||    
T  23358129 gat 23358127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 7472730 - 7472819
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  7472730 ttggatacacttatttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtaaaatgaccaaa 7472819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 44619104 - 44619211
Alignment:
Q  14 gaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataac 112  Q
    |||||| |||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||    
T  44619104 gaattgatttatgtttggatacacttgtttaaaaatgattattatgagttgatgttgtttggatagtttgaattaaaatcgattttgaatgtaaaatgac 44619203  T
Q  113 caaacacc 120  Q
    ||||||||    
T  44619204 caaacacc 44619211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 9988543 - 9988634
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| |||| |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9988543 tgaattgatttatgtttggatacacttatttaaaagtgattcatatgagttgatgttgtttggatagtttgaatgaaaattgattttgaatg 9988634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 28127329 - 28127437
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| |||   |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||| |    
T  28127329 tgaattgatttatgtttggatacactcaattaaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaaatgtaaaatga 28127428  T
Q  112 ccaaacacc 120  Q
    |||||||||    
T  28127429 ccaaacacc 28127437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 39141526 - 39141600
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| |||  ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39141526 ttggatacactcatttaaaaatgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 39141600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 2213572 - 2213468
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| |||   |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||| |    
T  2213572 tgaattgatttatgtttggatacactcaattaaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaaatgtaaaatga 2213473  T
Q  112 ccaaa 116  Q
    |||||    
T  2213472 ccaaa 2213468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 5916298 - 5916374
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| ||||  ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  5916298 ttggatacactttattaaaagtgattcatgtgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 5916374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 36312328 - 36312252
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| ||||  ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  36312328 ttggatacactttattaaaagtgattcatgtgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 36312252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 14821196 - 14821138
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14821196 aagtgattcttatgagttgatgttgtttggatattttgaatcaaaattgattttgaatg 14821138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 8170344 - 8170288
Alignment:
Q  47 gtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8170344 gtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatg 8170288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 31562753 - 31562817
Alignment:
Q  39 gtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  31562753 gtttaaaagtgattcttatgagtttatattgtttggataatttgaatcaaaattgattttgaatg 31562817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 2215323 - 2215212
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaa 106  Q
    |||| ||||||| |||||||| ||||| |||||||||||| | ||| ||  |||||||||||||||||||| ||| ||| | ||||||||||||||| ||    
T  2215323 tgaggtgaattgatttatgtttggatacacttgtttaaaaataattttt--gagttgatgttgtttggataatttaaattagaattgattttgaatgtaa 2215226  T
Q  107 aataaccaaacacc 120  Q
    ||| ||||||||||    
T  2215225 aatgaccaaacacc 2215212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 42516063 - 42516121
Alignment:
Q  58 gagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  42516063 gagttgatgttgtttggatagtttgaattaaaattgattttgaatgtataataaccaaa 42516121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 1945081 - 1945166
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattt 97  Q
    ||||||| |||||||| ||||| ||||  ||||||||||||  | || ||||||||||||||||||||||||||||||||||||||    
T  1945081 tgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattt 1945166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 25940316 - 25940373
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  25940316 aagtgattattatgagatgatgttgtttggacagtttgaatcaaaattgattttgaat 25940373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 28261327 - 28261269
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  28261327 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattaattttaaatg 28261269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 2234962 - 2234902
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  2234962 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 2234902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 7295418 - 7295478
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    ||||||||||| | |||||||||||||||||||||||||| | ||||| ||||||||||||    
T  7295418 taaaagtgattatcatgagttgatgttgtttggatagtttaagtcaaacttgattttgaat 7295478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 28641680 - 28641617
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||||| |||| |||||||||||||||||||  |||||| |||||||||||| ||||    
T  28641680 tttaaaagtgattattataagttgatgttgtttggatatgttgaattaaaattgattttaaatg 28641617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 32502023 - 32501960
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgg 104  Q
    |||||||| ||| ||| |||||||| |||||||| ||||||||||||||||||||||| |||||    
T  32502023 ttaaaagtaatttttacgagttgatattgtttgggtagtttgaatcaaaattgattttaaatgg 32501960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 7296221 - 7296131
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    ||||||| |||||||| ||||| |||  | ||||||||||| | |||| |||||||| |||||||||||| | ||||||||||||||||||    
T  7296221 tgaattgatttatgtttggatacactcatataaaagtgattatcatgacttgatgttatttggatagtttaagtcaaaattgattttgaat 7296131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 3602531 - 3602587
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||||||| |||| | || |||||||||||||||||||||| ||||||||||||    
T  3602531 taaaagtgatttttattaattcatgttgtttggatagtttgaattaaaattgatttt 3602587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 42089592 - 42089652
Alignment:
Q  30 gatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaa 90  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||  | |||||||||    
T  42089592 gatacacttatttaaaagtgattcttatgagttgatgttgtttggataaatcgaatcaaaa 42089652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 3853914 - 3853875
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  3853914 atgttgtttggatagtttgaatcaaaattgcttttgaatg 3853875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 18511118 - 18511064
Alignment:
Q  62 tgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    |||||||||||||||| ||| ||||||||||||||||||||| | ||| ||||||    
T  18511118 tgatgttgtttggataatttaaatcaaaattgattttgaatgcataattaccaaa 18511064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 27911472 - 27911386
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||| |||||||| |||||||||  ||||||||||||| ||   |||||||||| |||||||| ||| ||| ||||||||||||    
T  27911472 tgaattgatttatgtttggatatactcatttaaaagtgattatttcaagttgatgttatttggatactttaaattaaaattgatttt 27911386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 26207971 - 26208076
Alignment:
Q  13 tgaattggtttatgttg-gatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| ||||||||  |||| ||||  |||||| ||||| |||  ||||||||||||||||||  | |||||||||||||||||| |||| | ||| |    
T  26207971 tgaattgatttatgttttgatacacttaattaaaattgattcttacaagttgatgttgtttggattatatgaatcaaaattgattttaaatgtacaatga 26208070  T
Q  112 ccaaac 117  Q
    ||||||    
T  26208071 ccaaac 26208076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 36548230 - 36548177
Alignment:
Q  48 tgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||| ||||| |||||||||||||||||| ||| ||| |||||||||||||||    
T  36548230 tgatttttatgggttgatgttgtttggataatttaaattaaaattgattttgaa 36548177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 16467122 - 16467066
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||||||| ||||| |||||||| |||||||||||||  ||||||||| |||||    
T  16467122 taaaagtgattcttatgggttgatgtagtttggatagtttagatcaaaattaatttt 16467066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 25747953 - 25748012
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||| ||||| |||| | || ||||||||||| |||||||||||||||||| |||||||    
T  25747953 taaaattgattcttatcaatttatgttgtttgggtagtttgaatcaaaattgcttttgaa 25748012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 43436351 - 43436410
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttg 99  Q
    ||||||||| |||  ||||| |||||||||||||||||| ||| || |||||||||||||    
T  43436351 tttaaaagtaattcatatgaattgatgttgtttggatagattggattaaaattgattttg 43436410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 37640236 - 37640273
Alignment:
Q  66 gttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  37640236 gttgtttggatagtttttatcaaaattgattttgaatg 37640273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 2213698 - 2213658
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgt 67  Q
    ||||||| |||| ||||||||||||| ||||||||||||||    
T  2213698 ttggatacacttatttaaaagtgattcttatgagttgatgt 2213658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 291757 - 291989
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaa 106  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||            ||||||||||||||||||||||| ||    
T  291757 tgagatgaattggtttatgtttggatacacttgtttaaaagtgattgttatgagttgttgtt------------tgaatcaaaattgattttgaatgtaa 291844  T
Q  107 aataaccaaacacctctaaacatagaatttcttatattttgtc---nnnnnnntataacaattatatcacatttgccaaagctgtattttttaa-gtgta 202  Q
    ||| |||||||||| ||||||||||||||||||||||||| ||           | ||||||||||||||||||||||||||||||||||||||  ||||    
T  291845 aatgaccaaacacccctaaacatagaatttcttatattttatcaaaaaaaaaaaaaaacaattatatcacatttgccaaagctgtattttttaacctgta 291944  T
Q  203 gtgatnnnnnnnntcacatctataacaaaaataactgcaacccaac 248  Q
    |||||        |||||| |||||||||||||||| |||||||||    
T  291945 gtgat-aaaaaaatcacatttataacaaaaataactacaacccaac 291989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 43728937 - 43729012
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43728937 ttggataaacttatttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 43729012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 12247486 - 12247412
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||    
T  12247486 ttggatacacttgtttaaaagtgatttttatgagttgatgttgtttggagaatttgaatcaaaattgattttgaa 12247412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 12468278 - 12468190
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||    
T  12468278 ttggatacacttttttaaaagtgatttttatgagttgat-ttgtttggatagtttgaatcaaaattgattttgaatgtacaatgaccaaa 12468190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 35536135 - 35536064
Alignment:
Q  30 gatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  35536135 gatacactcgtttaaaagtgattcttatgagttgatgttgtttggataatttgaatcaaaattgattttgaa 35536064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 6464656 - 6464598
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6464656 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 6464598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 45710097 - 45710039
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45710097 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 45710039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 36205273 - 36205181
Alignment:
Q  12 atgaattggtttatg-ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| || ||||||| |||| ||||||||||||| ||| ||||  |||||| |||||||||||||||||||||||||||||||||    
T  36205273 atgaattggtttttgattggataaacttatttaaaagtgattcttacgagtgaatgttgcttggatagtttgaatcaaaattgattttgaatg 36205181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 31223455 - 31223364
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||   || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31223455 tgaattgatttatgtttggatacactttaatagaagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatg 31223364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 35569247 - 35569338
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  ||||||||||||  | || ||||||||||||||||||||||||||||||||||||||||||||    
T  35569247 tgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatg 35569338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 42850264 - 42850355
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  |||||||||||| |||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  42850264 tgaattgatttatgtttggatacacttccttaaaagtgattcttatgagttgatgttgtttggatattttacatcaaaattgattttgaatg 42850355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 4369876 - 4369938
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  4369876 ttaaaagtgattcttatgagttgatgttgtttggataggttgaatcaaaattgattttaaatg 4369938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 10470638 - 10470580
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10470638 aagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatg 10470580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 13056050 - 13055988
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  13056050 ttaaaagtgatttttatgagttgatattgtttggatagtttgaataaaaattgattttgaatg 13055988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 5410692 - 5410631
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  5410692 ttaaaagtgattcttatgacttgatgttgtttggatagtttgaatcataattgattttgaat 5410631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 6166176 - 6166099
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgg 104  Q
    ||||||| |||  ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  6166176 ttggatacactcatttaaaagtgattcttaggagttgatgttgtttgggtagtttgaatcaaaattgattttaaatgg 6166099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 20800322 - 20800413
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  ||||||||||||  | || ||||||||||||||||||||||||||||| ||||||||||||||    
T  20800322 tgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaatattgattttgaatg 20800413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 7826428 - 7826490
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||    
T  7826428 ttaaaagtgattcttatgaattgatgttgtttggataggttgaatcaaaattgattttaaatg 7826490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 40229510 - 40229604
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||| ||||||| |||||||| ||||| ||||  ||| | |||||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  40229510 tgaggtgaattgatttatgtttggatacactttcttacaggtgattcttctgagttgatgttgtttggataatttgaatcaaaattgattttgaa 40229604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 48510989 - 48510903
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||| |||||||| ||||| ||||| |||||||||||| |||||| ||||||||||||| ||||| || |||||||||||||||    
T  48510989 tgaattgatttatgtttggatacacttgcttaaaagtgattcttatgaattgatgttgtttgaatagtatgtatcaaaattgatttt 48510903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 1199908 - 1199819
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| |||||||| ||||| ||||  ||| |||||||| || ||  |||||||||||||||||||||||||||||||||||||||||    
T  1199908 tgaattgatttatgtttggatacactttattagaagtgattcttgtggattgatgttgtttggatagtttgaatcaaaattgattttgaa 1199819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 13931689 - 13931614
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    |||||||||||   |||||  ||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  13931689 ttggatatactcacttaaacatgattcttacaagttgatgttgtttggatagtttgaatcaaaattgattttgaat 13931614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 25230055 - 25230000
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttga 100  Q
    |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  25230055 aagtgattcttattagttgatgttgtttggatagtttgaatgaaaattgattttga 25230000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 50977417 - 50977475
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  50977417 aagtgatttttatgagtagatattgtttggatagtttgaataaaaattgattttgaatg 50977475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 15884276 - 15884203
Alignment:
Q  43 aaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    |||||||||| |||| | || ||||||||||||||||||| |||||||||||||||||||| | ||| ||||||    
T  15884276 aaaagtgatttttataaattcatgttgtttggatagtttggatcaaaattgattttgaatgcataattaccaaa 15884203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 9447596 - 9447533
Alignment:
Q  30 gatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattg 93  Q
    ||||||||  ||||||||||||| ||  |||||||||||||||||||||||||||| |||||||    
T  9447596 gatatactcatttaaaagtgattctttcgagttgatgttgtttggatagtttgaattaaaattg 9447533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 11023403 - 11023466
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgg 104  Q
    |||||||| ||| ||| |||||||| |||||||| ||||||||||||||||||||||| |||||    
T  11023403 ttaaaagtaatttttacgagttgatattgtttgggtagtttgaatcaaaattgattttaaatgg 11023466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 31933772 - 31933717
Alignment:
Q  48 tgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||| |||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  31933772 tgattcttatgagttgatgttgtttggatattttacatcaaaattgattttgaatg 31933717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 25061277 - 25061221
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||||||| |||| | |||||| |||||||||| ||||||||||||||||||||    
T  25061277 taaaagtgattcttatcaattgatgatgtttggataatttgaatcaaaattgatttt 25061221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 11051407 - 11051446
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  11051407 atgttgtttggatagtttgaataaaaattgattttgaatg 11051446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 40821873 - 40821815
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| ||||  ||||||||| |||||||| |||||||||||||||| ||||||||    
T  40821873 aagtgattcttatttgttgatgttatttggataatttgaatcaaaattgagtttgaatg 40821815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 26058294 - 26058235
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttg 99  Q
    ||||||||| |||  ||||| |||||||||||||||||| ||| || |||||||||||||    
T  26058294 tttaaaagtaattcatatgaattgatgttgtttggatagattggattaaaattgattttg 26058235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 46033210 - 46033249
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  46033210 atgttgtttggatagtttttatcaaaattgattttgaatg 46033249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 47123452 - 47123381
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||| ||||  |||||||||||| |||| ||||| |||||||||||||  || ||||||||||| ||||    
T  47123452 ttggatacacttcgttaaaagtgattcttataagttggtgttgtttggatacattaaatcaaaattgctttt 47123381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 50406182 - 50406107
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    |||||| ||||| |||| ||||| |||||||||||||  |||||||||||||| |||| |||| | ||| ||||||    
T  50406182 ttaaaaatgattcttataagttgttgttgtttggatacattgaatcaaaattgtttttaaatgtataattaccaaa 50406107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 33226233 - 33226274
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatgga 105  Q
    ||||||| | |||||||||||||||||||| |||||||||||    
T  33226233 atgttgtctagatagtttgaatcaaaattgcttttgaatgga 33226274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 49243099 - 49243147
Alignment:
Q  61 ttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaat 109  Q
    |||||||||||| |||||||||||||| |||| ||||| |||| |||||    
T  49243099 ttgatgttgtttagatagtttgaatcagaattaatttttaatgcaaaat 49243147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 9456168 - 9456079
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  9456168 ttggatacacttgtttaaaagtgattcttatgagttgatcttgtttggatagtttgaatcaaaattgattttgaatgtaaaatgaccaaa 9456079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 48134643 - 48134567
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48134643 ttggataaacttgtttaaaagtgatttttataagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 48134567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 43737985 - 43738074
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  43737985 ttggataaacttatttaaaagtgattcttatgagtggatgttgtttggatagtttgaatcaaaattgattttgaatgtgaaatgaccaaa 43738074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 37562648 - 37562561
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttg 99  Q
    ||||||| |||||||| ||||| |||| |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  37562648 tgaattgatttatgtttggatacacttatttaaaagtgattcatatgagttgatgttgtttggatagtttgaatgaaaattgattttg 37562561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 34366041 - 34366101
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  34366041 ttaaaagtgatttttatgagttgatgttgtttggatagtttgaataaaaattgattttgaa 34366101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 3342869 - 3342778
Alignment:
Q  12 atgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    |||||||| |||||||| ||||| ||||   || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3342869 atgaattgatttatgtttggatacactttaatagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttgaat 3342778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 12632114 - 12632205
Alignment:
Q  13 tgaattggtttatgttgga-tatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| || | |||| | |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||    
T  12632114 tgaattgatttatgtttgagtgtactcgcttaaaagtgattcttatgagttgatgttgtttgaattgtttgaatcaaaattgattttgaatg 12632205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 47301622 - 47301685
Alignment:
Q  46 agtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaat 109  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47301622 agtgattcttatgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtaaaat 47301685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 39391163 - 39391257
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||| ||||||| |||||||| ||||| ||||  ||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  39391163 tgaggtgaattgatttatgtttggatacactttcttacaagtgattcttatgaattgatgttgtttgaatagtttgaatcaaaattgattttgaa 39391257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 34010390 - 34010329
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34010390 tttaaaagtggttcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaa 34010329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 3622491 - 3622582
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  |||||||||||| ||| |||||||||||||||||||||| | |||||||||||||||| ||||    
T  3622491 tgaattgatttatgtttggatacacttacttaaaagtgattcttacgagttgatgttgtttggatagtataaatcaaaattgattttaaatg 3622582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 44967463 - 44967518
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttga 100  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  44967463 aagtgattcttatgagttgatgttgtttggataatttgaatcaaaattgattttga 44967518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 19095999 - 19095926
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| ||| |||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  19095999 ttggatacactcgtttaaaaatgattcttatgagtt-atgttgtttggataatttgaatcaaaattgattttgaa 19095926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 47217572 - 47217661
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| |||||||| ||||  ||| | |||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||    
T  47217572 tgaattgatttatgtttggatgcactcgcttaaaagtgattttgatgggttgatgttgtttggatagtttgaattaaaattgattttgaa 47217661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 37639508 - 37639417
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||| | ||||  |||||||||||| || || ||||||||||||||||||||||||||||||||| ||||| ||||    
T  37639508 tgaattgatttatgtttggagaaactttattaaaagtgattcttgtgggttgatgttgtttggatagtttgaatcaaaattaattttaaatg 37639417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 38230146 - 38230055
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| | ||  ||||||||||||  | || ||||||||||||||||||||||||||||||||||||||| ||||    
T  38230146 tgaattgatttatgtttggatacattttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttaaatg 38230055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 3375539 - 3375477
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| |||||||| ||||||||||||||  |||| ||||||||||||||||||||    
T  3375539 ttaaaagtgattcttatgagtcgatgttgtttggatgatttggatcaaaattgattttgaatg 3375477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 10372022 - 10372080
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| || || |||||||||||| |||||||||||||||||||||||||||||||    
T  10372022 aagtgattcttgtgggttgatgttgttcggatagtttgaatcaaaattgattttgaatg 10372080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 42740452 - 42740384
Alignment:
Q  30 gatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||||||  |||||||||||| ||||| |||||| ||||||||||||| || |||||||||||||||    
T  42740452 gatatacttacttaaaagtgattcttatgtgttgatattgtttggatagtatgtatcaaaattgatttt 42740384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 43631741 - 43631817
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||  |||||||||||| || ||||||||| |||||||||||  ||||||||||||||||| ||||||    
T  43631741 ttggatatgcttaattaaaagtgattcttttgagttgatattgtttggatatattgaatcaaaattgattgtgaatg 43631817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 386543 - 386597
Alignment:
Q  43 aaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||||||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  386543 aaaagtgattcttatga-ttgatgttgtttggatagattgaatcaaaattgatttt 386597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 32206003 - 32205914
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  |||||||||||| ||||||||| |||||||||| ||||| |||||||||||||||||| ||||    
T  32206003 tgaattgatttatgtttggatacacttacttaaaagtgattcttatgagtt-atgttgtttg-atagtatgaatcaaaattgattttaaatg 32205914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 48459788 - 48459702
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||| |||||||| ||||| ||||  |||||||||||| |||||| | ||||||||||||||||| || || ||||||||||||    
T  48459788 tgaattgatttatgtttggatacacttacttaaaagtgattcttatgaatggatgttgtttggatagtatgtattaaaattgatttt 48459702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 34011021 - 34011082
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgttt-ggatagtttgaatcaaaattgattttgaa 101  Q
    |||||||||||| ||||||||||||||||||| || || ||| |||||||||||||||||||    
T  34011021 ttaaaagtgattcttatgagttgatgttgtttggggtactttaaatcaaaattgattttgaa 34011082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 47021962 - 47021906
Alignment:
Q  47 gtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||| ||| || ||||||||||||||||| ||||||| |||||||||||||||||    
T  47021962 gtgattcttacgaattgatgttgtttggataatttgaatgaaaattgattttgaatg 47021906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 40903228 - 40903302
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||||||| |||| | || |||||||||||||||||  ||||||||||||||||| ||| | ||| ||||||    
T  40903228 taaaagtgatttttatcaattcatgttgtttggatagttcaaatcaaaattgattttggatgtataattaccaaa 40903302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 37886854 - 37886887
Alignment:
Q  65 tgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||||||||||||||||||||||||||||||    
T  37886854 tgttgtttggatagtttgaatcaaaattgatttt 37886887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 3750722 - 3750678
Alignment:
Q  54 ttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||| ||||||||||||||||||||| |||||||||| |||||    
T  3750722 ttatgaattgatgttgtttggatagtttaaatcaaaattaatttt 3750678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 4035960 - 4035921
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  4035960 atgttgtttggatagttttaatcaaaattgcttttgaatg 4035921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 32186990 - 32186931
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttg 99  Q
    ||||||||| |||  ||||| |||||||||||||||||| ||| || |||||||||||||    
T  32186990 tttaaaagtaattcatatgaattgatgttgtttggatagattggattaaaattgattttg 32186931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 36920238 - 36920293
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatt 96  Q
    ||||| |||||| || |||||||||||||||||| ||  |||||||||||||||||    
T  36920238 ttaaaggtgattcttttgagttgatgttgtttgggtacattgaatcaaaattgatt 36920293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 41715707 - 41715648
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttg 99  Q
    ||||||||| |||  ||||| |||||||||||||||||| ||| || |||||||||||||    
T  41715707 tttaaaagtaattcatatgaattgatgttgtttggatagattggattaaaattgattttg 41715648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 43581682 - 43581627
Alignment:
Q  43 aaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||||||| | || | ||||||||||||||||||||||||| ||||||| ||||    
T  43581682 aaaagtgattataattaattgatgttgtttggatagtttgaattaaaattgctttt 43581627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 46541647 - 46541593
Alignment:
Q  43 aaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||||||| |||||| ||||| |||||| ||||| |||||||||||||||||||    
T  46541647 aaaagtgattcttatga-ttgatattgttttgatagattgaatcaaaattgatttt 46541593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 1766473 - 1766415
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttga 100  Q
    ||||||||||| |||| | |||||| |||||| ||| ||||||| ||||||||||||||    
T  1766473 taaaagtgattcttatcaattgatgatgtttgaataatttgaattaaaattgattttga 1766415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 12964483 - 12964438
Alignment:
Q  43 aaaagtgattgttatgagttgatgttgtttggatagtttgaatcaa 88  Q
    |||||| ||| ||||||||| |||||||||||||||||||| ||||    
T  12964483 aaaagtaattattatgagttaatgttgtttggatagtttgagtcaa 12964438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 37008414 - 37008447
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatag 78  Q
    |||||||| |||||||||||||||||||||||||    
T  37008414 aagtgattcttatgagttgatgttgtttggatag 37008447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 39634227 - 39634300
Alignment:
Q  43 aaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    |||||||||| |||| | ||  |||||||||||||  ||| |||||||||||||||||||| | ||| ||||||    
T  39634227 aaaagtgattcttataaattcttgttgtttggataacttggatcaaaattgattttgaatgcataattaccaaa 39634300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 42904631 - 42904551
Alignment:
Q  13 tgaattggtttatgttg-gatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaatt 92  Q
    ||||||| ||||||||  |||| ||| |||||||||||||| |||||| || || ||||||| ||| ||| ||||||||||    
T  42904631 tgaattgatttatgttttgatacactcgtttaaaagtgattcttatgaattaattttgtttgtatattttaaatcaaaatt 42904551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 13739248 - 13739159
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  13739248 ttggatacacttgtttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtaaaatgaccaaa 13739159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 13744748 - 13744659
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  13744748 ttggatacacttgtttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtaaaatgaccaaa 13744659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 31132506 - 31132432
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31132506 ttggatacacttatttaaaagtgattcttatgggttgatgttgtttggatagtttgaatcaaaattgattttgaa 31132432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 29409295 - 29409399
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| | || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |    
T  29409295 tgaattgatttatgtttggatacagttttttaaaaatgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtataatga 29409394  T
Q  112 ccaaa 116  Q
    |||||    
T  29409395 ccaaa 29409399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 10826133 - 10826062
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||    
T  10826133 ttggatatacttatttaaaagtgattcttatgagttgattttgtttggatagtttgaatcaaaattaatttt 10826062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 16442394 - 16442485
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| |||| |||||||||||||  ||||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  16442394 tgaattgatttatgtttggatacacttatttaaaagtgattcatatgagttgatattgtttggataatttgaatgaaaattgattttgaatg 16442485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 16548196 - 16548105
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  ||||||||||||  | || ||||||||||||||||||||||||||||||||||||||||||||    
T  16548196 tgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatg 16548105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 6208136 - 6208197
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  6208136 taaaagtgattcttatgagttgatgttgtttagatagtttgaatcaaaattaattttgaatg 6208197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 17830090 - 17830133
Alignment:
Q  60 gttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17830090 gttgatgttgtttggatagtttgaatcaaaattgattttgaatg 17830133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 33899048 - 33899140
Alignment:
Q  12 atgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||||| ||||| |||  | ||||||||||| ||||||||| ||  ||||||||| |||| |||||||||||||||||||||    
T  33899048 atgaattgatttatgtttggatacactaatgtaaaagtgattcttatgagttaataatgtttggatggtttaaatcaaaattgattttgaatg 33899140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 21455910 - 21455848
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| | ||||||| |||||||||| |||||||||||||||||| ||||| ||||    
T  21455910 ttaaaagtgattctcatgagttaatgttgtttgcatagtttgaatcaaaattaattttaaatg 21455848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 699584 - 699511
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| ||| |||| |||| |||||||| ||||||||||||||||||| ||||||||||  ||||| ||||||    
T  699584 taaaagtaattcttataagttaatgttgtt-ggatagtttgaatcaaaatcgattttgaatataaaattaccaaa 699511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 1312535 - 1312587
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||||||||||||||||  |||||||||||||||||| | ||| ||||||    
T  1312535 atgttgtttggatagtttgacccaaaattgattttgaatgcataattaccaaa 1312587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 7215603 - 7215546
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||||||||| | ||||||| |||||||||| |||  ||||||||||||| |||||    
T  7215603 ttaaaagtgattctcatgagttaatgttgtttgcataaattgaatcaaaattaatttt 7215546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 43781577 - 43781666
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  43781577 ttggatacacttgtttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtaaaatgaccaaa 43781666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 51922982 - 51922877
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| ||||   ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  51922982 tgaattgatttatgtttggatacactttactaaaagtaattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtataatga 51922883  T
Q  112 ccaaac 117  Q
    ||||||    
T  51922882 ccaaac 51922877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 30842159 - 30842077
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaat 109  Q
    ||||||| |||||||| ||||||||| |||||||||||| |  |||||||||||||||||||||||||||||||||| |||||    
T  30842159 ttggatacacttgtttgaaagtgattcttatgagttgatttcatttggatagtttgaatcaaaattgattttgaatgtaaaat 30842077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 48407756 - 48407838
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaat 109  Q
    ||||||| |||||||| ||||||||| |||||||||||| |  |||||||||||||||||||||||||||||||||| |||||    
T  48407756 ttggatacacttgtttgaaagtgattcttatgagttgatttcatttggatagtttgaatcaaaattgattttgaatgtaaaat 48407838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 13183094 - 13183199
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| |||| ||||||| ||||| |||| |||||||||| |||||||| ||| ||||||||||||||||||||| ||||| |    
T  13183094 tgaattgatttatgtttggatacacttatttaaaaatgatttttataagttgatgttttttggataatttaaatcaaaattgattttgaatgtaaaatga 13183193  T
Q  112 ccaaac 117  Q
    ||||||    
T  13183194 ccaaac 13183199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 29149351 - 29149455
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| |||   |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||| |    
T  29149351 tgaattgatttatgtttggatacactcaattaaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaaatgtaaaatga 29149450  T
Q  112 ccaaa 116  Q
    |||||    
T  29149451 ccaaa 29149455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 16566347 - 16566256
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  ||||||||||||  | || ||||||||||||||||||||||||||||||||||||||||||||    
T  16566347 tgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatg 16566256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 28987030 - 28986971
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgg 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28987030 aagtgatttttatgagttgatgttgtttggatagtttgaatcaaaattgattttaaatgg 28986971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 39636827 - 39636736
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  |||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  39636827 tgaattgatttatgtttggatacacttacttaaaagtgattcttacgagttgatgttgtttggatagtatgaatcaaaattgattttaaatg 39636736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 48550471 - 48550562
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||   || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48550471 tgaattgatttatgtttggataaactttaatagaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttaaatg 48550562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 14072512 - 14072454
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14072512 aagtgattctaatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 14072454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 6138664 - 6138749
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattt 97  Q
    ||||||| |||||||| ||||| |||| ||||||| |||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  6138664 tgaattgatttatgtttggatacacttatttaaaaatgattcatatgagttgatgttgtttggatagtttgaatgaaaattgattt 6138749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 14564219 - 14564280
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  14564219 ttaaaagtgattcttatgagttaatgttgtttggatagattgaatcaaaattgattttgaat 14564280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 15603384 - 15603311
Alignment:
Q  30 gatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||| |||||| ||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  15603384 gatatacttgcttaaaaatgattcttatgagttgatgttgtttggataatttaagtcaaaattgattttgaatg 15603311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 42944942 - 42945047
Alignment:
Q  13 tgaattggtttatgttg-gatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| ||||||||  |||||||||  |||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||| |||| | ||| |    
T  42944942 tgaattgatttatgtttagatatacttacttaaaagtgattcttatgtgttgatgttgtttggatagtatgtatcaaaattgattttaaatgtataatga 42945041  T
Q  112 ccaaac 117  Q
    ||||||    
T  42945042 ccaaac 42945047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 49136564 - 49136460
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| |||   |||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||| | ||| |    
T  49136564 tgaattgatttatgtttggatacactcacttaaaagtgattcttatgagttgatgttgtttgaataattttaatcaaaattgattttgaatgtacaatga 49136465  T
Q  112 ccaaa 116  Q
    |||||    
T  49136464 ccaaa 49136460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 9889410 - 9889469
Alignment:
Q  44 aaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  9889410 aaagtgattcttatgagtagatgttgtttggatagtttgaattaaaattgattttgaatg 9889469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 9893721 - 9893662
Alignment:
Q  44 aaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9893721 aaagtgattcttatgagttgatgttgtttggatagtttaaattaaaattgattttgaatg 9893662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 26651922 - 26651997
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaac 117  Q
    ||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| |||||||    
T  26651922 taaaagtaattcttatgagtcgatgttatttggatagtttgaatcaaaattgattttgaatgtataatgaccaaac 26651997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 4954124 - 4954186
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  4954124 ttaaaagtgattcttatgagttgatgttgtttggataggttgaatcaaaattaattttaaatg 4954186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 32238135 - 32238193
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32238135 aagtgattcatatgagttgatgttgtttggatagtttgaatcaaaactgattttgaatg 32238193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 54153054 - 54152996
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  54153054 aagtgattctcatgagttgatgttgtttgaatagtttgaatcaaaattgattttgaatg 54152996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 2175191 - 2175280
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| |||||||| ||||  ||| | |||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||    
T  2175191 tgaattgatttatgtttggatgcactcgcttaaaagtgattttgatgggttgatgttgtttggatagtttgaattaaaattgattttgaa 2175280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 19592275 - 19592379
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| ||||   ||||||||||| ||| || |||| |||||||||||||||||||| ||||||||||||||||| | ||| |    
T  19592275 tgaattgatttatgtttggatacactttactaaaagtgattcttacgaattgacgttgtttggatagtttgaatgaaaattgattttgaatgtacaatga 19592374  T
Q  112 ccaaa 116  Q
    |||||    
T  19592375 ccaaa 19592379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 43772182 - 43772253
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||| |||| |||| |||||||| ||| |||||||||||||||||||| | ||||||||||||||||||    
T  43772182 ttggatacacttttttagaagtgattcttacgagttgatgttgtttggataatatgaatcaaaattgatttt 43772253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 31520443 - 31520505
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||| ||||    
T  31520443 ttaaaagtgatttttatgagttgatgttttttgggtagtttgaataaaaattgattttaaatg 31520505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 30887227 - 30887288
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||| ||||||||| ||| ||||||||| ||||| ||||||||||||||||||||    
T  30887227 taaaagtgattcttatgagttaatgatgtttggatggtttgtatcaaaattgattttgaatg 30887288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 6505213 - 6505153
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    ||||||||||| | |||| ||||||||||||||||||||| | ||||||||||||||||||    
T  6505213 taaaagtgattatcatgacttgatgttgtttggatagtttaagtcaaaattgattttgaat 6505153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 48908288 - 48908228
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    |||||||| |||  ||| |||||||||||||||||||| ||||||||||||||||||||||    
T  48908288 ttaaaagtaattcatataagttgatgttgtttggatagcttgaatcaaaattgattttgaa 48908228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 55638861 - 55638921
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    |||||| |||| |||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  55638861 taaaagggattcttatgagttgatattgtttggataatatgaatcaaaattgattttgaat 55638921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 46830113 - 46830204
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||  |||||| ||||| |||||||||||||||||||||||| | |  ||||||||||||||| ||||    
T  46830113 tgaattgatttatgtttggatacactttcttaaaattgattcttatgagttgatgttgtttggatattctacatcaaaattgattttaaatg 46830204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 26426187 - 26426249
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| || ||||||||| |||||||||||  ||||||||||||||||| ||||||    
T  26426187 ttaaaagtgattcttttgagttgatattgtttggatacattgaatcaaaattgattgtgaatg 26426249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 54735723 - 54735785
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| ||||||||||||||||||||  || ||| ||||||||||||| |||||||    
T  54735723 ttaaaagtgattcttatgagttgatgttgtttgagtattttaaatcaaaattgatcttgaatg 54735785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 5025519 - 5025484
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttg 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  5025519 atgttgtttggatagtttgaatcaaaattgattttg 5025484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 48257115 - 48257048
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaat 109  Q
    ||||||||||| |||| | || ||||||||||||||  ||| |||||||||||||||||||| |||||    
T  48257115 taaaagtgattcttataaattcatgttgtttggataaattggatcaaaattgattttgaatgcaaaat 48257048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 49519757 - 49519686
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||| ||||| |||||| ||||| |||||| ||||| ||||||||||||| || || ||||||||||||    
T  49519757 ttggatacacttgcttaaaaatgattcttatgaattgatattgtttggatagtatgtattaaaattgatttt 49519686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 56241909 - 56241983
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||||||| ||||||||||||  ||||| |||  ||| ||||||||||||||||||||| | ||| ||||||    
T  56241909 taaaagtgattcttatgagttgataatgtttagatgatttaaatcaaaattgattttgaatgtataatgaccaaa 56241983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 38306022 - 38305949
Alignment:
Q  43 aaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    |||||||||| |||| | || ||||||||||||||  ||| |||||||||||||||||||| | ||| ||||||    
T  38306022 aaaagtgattcttataaattcatgttgtttggataacttggatcaaaattgattttgaatgcataattaccaaa 38305949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 38694088 - 38693999
Alignment:
Q  15 aattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||| ||||||||| ||||| ||| | |||||||||||| ||||| |||||| ||| ||| ||| ||| |||||||||| ||||||||||    
T  38694088 aattagtttatgtttggatacactcgcttaaaagtgattcttatgggttgatcttgcttgaataatttaaatcaaaattaattttgaatg 38693999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 13167539 - 13167463
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||||||||| |||||  || ||| ||||||||||| |||||||||||||| |||| |||| | ||| ||||||    
T  13167539 tttaaaagtgattcttatgtattaatgatgtttggatagattgaatcaaaattgcttttaaatgcataattaccaaa 13167463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 14054893 - 14054806
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttg 99  Q
    ||||||| |||||||| ||||| |||| | ||||||||||| ||   ||||||||||||||| ||| ||| ||| |||||||||||||    
T  14054893 tgaattgatttatgtttggataaacttatataaaagtgattatttcaagttgatgttgtttgaatactttaaattaaaattgattttg 14054806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 91
Target Start/End: Complemental strand, 15619610 - 15619579
Alignment:
Q  60 gttgatgttgtttggatagtttgaatcaaaat 91  Q
    ||||||||||||||||||||||||||||||||    
T  15619610 gttgatgttgtttggatagtttgaatcaaaat 15619579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 25312742 - 25312671
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||| ||||  ||||||| |||| |||||| ||| |||||||||||||  |||||||||||||| ||||    
T  25312742 ttggatacactttgttaaaagcgattcttatgaattgttgttgtttggatacattgaatcaaaattgctttt 25312671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 45106398 - 45106359
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  45106398 atgttgtttggatagtttttatcaaaattgattttgaatg 45106359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 14076028 - 14075966
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| |||||| |||||||||||||  || ||| |||||||||| || |||||||    
T  14076028 ttaaaagtgattcttatgaattgatgttgtttgagtactttaaatcaaaattaatcttgaatg 14075966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 50523350 - 50523387
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  50523350 atgttgtttggatagttttgatcaaaattgattttgaa 50523387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 54655262 - 54655205
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttg 99  Q
    ||||||||||| ||   ||||||||||||||||||| ||| ||| |||||||||||||    
T  54655262 taaaagtgattatttcaagttgatgttgtttggatactttaaattaaaattgattttg 54655205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 33721971 - 33721999
Alignment:
Q  75 atagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||||||||||||||||||||    
T  33721971 atagtttgaatcaaaattgattttgaatg 33721999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 46926090 - 46926010
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaatt 92  Q
    ||||||| |||||||| ||||| ||| |||||||||||||| |||||| || || || |||  ||| ||||||||||||||    
T  46926090 tgaattgatttatgtttggatacactcgtttaaaagtgatttttatgaattaattttatttatatattttgaatcaaaatt 46926010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 8506 - 8402
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  8506 tgaattgatttatgtttggatacacttttttaaaaatgatttttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtacaatga 8407  T
Q  112 ccaaa 116  Q
    |||||    
T  8406 ccaaa 8402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 20813188 - 20813112
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20813188 ttggatatacttattcaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 20813112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 10853313 - 10853402
Alignment:
Q  15 aattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||| |||||||| |||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10853313 aattgatttatgtttggatatactcacttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 10853402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 42318372 - 42318290
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaat 109  Q
    ||||||| |||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  42318372 ttggatacacttgtttgaaagtgattcttatgagttgatttcgtttggatagtttgaatcaaaattgattttgaatgtaaaat 42318290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 38125500 - 38125582
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaat 109  Q
    ||||||| |||||||| ||||||||| |||||||||||| | |||||||||||||||||||||||| |||||||||| |||||    
T  38125500 ttggatacacttgtttgaaagtgattcttatgagttgatttcgtttggatagtttgaatcaaaattaattttgaatgtaaaat 38125582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 53179903 - 53179802
Alignment:
Q  15 aattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataacc 113  Q
    ||||| |||||||| ||||| |||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||| |||    
T  53179903 aattgatttatgtttggatacacttttttaaaagtgatttttatgagttgat-ttgtttggatagtttaaatcaaaattgattttgaatgtacaatgacc 53179805  T
Q  114 aaa 116  Q
    |||    
T  53179804 aaa 53179802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 10334196 - 10334105
Alignment:
Q  12 atgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    |||||||| |||||||| ||||| ||||   ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10334196 atgaattgatttatgtttggatacactttactaaaagtaattcttatgagttgacgttgtttggatagtttgaatcaaaattgattttgaat 10334105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 38172351 - 38172442
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| ||||| ||||   || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38172351 tgaattgatttatgtttggatacactttaatagaagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatg 38172442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 15511448 - 15511510
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  15511448 ttaaaagtgatttttatgagttgatattgtttggatagtttgaataaaaattgattttgaatg 15511510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 16246171 - 16246229
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16246171 aagtgattcttaggagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 16246229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 31618964 - 31619022
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31618964 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatg 31619022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 35425358 - 35425300
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35425358 aagtgattcttatgagttgatattgtttggatagtttgaatcaaaattgattttgaatg 35425300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 48189518 - 48189576
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48189518 aagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatg 48189576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 53074931 - 53074869
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  53074931 ttaaaagtgattcttatgagtggatgttgtttggatagtttgaatcaaaattgattttaaatg 53074869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 26519721 - 26519617
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataa 111  Q
    ||||||| |||||||| ||||| |||   |||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||| |||| ||||| |    
T  26519721 tgaattgatttatgtttggatacactcaattaaaagtgatttttattagttgatattgtttggatagtttgaaacaaaattgattttaaatgtaaaatga 26519622  T
Q  112 ccaaa 116  Q
    |||||    
T  26519621 ccaaa 26519617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 44224820 - 44224728
Alignment:
Q  12 atgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||||| ||||| |||   |||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  44224820 atgaattgatttatgtttggatacactcacttaaaagtgattcttatgagttgatgttgtttggataattttagtcaaaattgattttgaatg 44224728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 8424806 - 8424861
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttga 100  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  8424806 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttga 8424861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 22737009 - 22736947
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  22737009 ttaaaagtgattattatgagttaatgttgttgggatggtttgaatcaaaattgattttgaatg 22736947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 30811608 - 30811666
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  30811608 aagtgattcttatgacttgatattgtttggatagtttgaatcaaaattgattttgaatg 30811666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 52966882 - 52966944
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  52966882 ttaaaagtgattcttatgagttgatgttgtttagataggttgaatcaaaattgattttaaatg 52966944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 3348298 - 3348209
Alignment:
Q  15 aattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||| |||||||| ||||| ||||  |||||||| ||| |||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  3348298 aattgatttatgtttggatacacttccttaaaagtaattcttatgagttgatgttgtttggatattttatatcaaaattgattttgaatg 3348209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 23207112 - 23207199
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||| |||||||| ||||| |||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  23207112 tgaattgatttatgtttggatacacttttttacaagtgatt-ttatgagttgatgttgtttg-atagtttgaatcaaaattaattttgaa 23207199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 23496351 - 23496290
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||||||||    
T  23496351 taaaagtgattcttgcgggttgatgttgtttggatagtttgaatcaaaattgattttgaatg 23496290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 31084264 - 31084175
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    ||||||| |||||||| ||||| |||| || |||||||||| |||||| ||||| || |||||||||||||||||| ||||||||||||||    
T  31084264 tgaattgatttatgtttggatacacttctt-aaaagtgattcttatgacttgatattatttggatagtttgaatcataattgattttgaat 31084175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 44939491 - 44939549
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||||| ||||||||||    
T  44939491 aagtgattcttatgagttgatgttgtttgaatagttttaatcaaaattaattttgaatg 44939549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 32357540 - 32357479
Alignment:
Q  40 tttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 101  Q
    ||||||||||||| ||||| ||||||||||||||| || ||||||| |||||||||||||||    
T  32357540 tttaaaagtgattcttatgtgttgatgttgtttgggtactttgaattaaaattgattttgaa 32357479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 38340862 - 38340772
Alignment:
Q  13 tgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||| |||||||| |||||| ||| || |||||| ||| |||| |||||| |||||||||||||||||||| |||||||||||| ||||    
T  38340862 tgaattgatttatgtttggatatgcttatt-aaaagtaatttttataagttgacgttgtttggatagtttgaataaaaattgattttaaatg 38340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 45423842 - 45423916
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||||||| |||| | || ||||||||||||||| |||||||||||||||||||| ||| | ||| ||||||    
T  45423842 taaaagtgattcttatcaattcatgttgtttggatagcttgaatcaaaattgattttggatgtacaattaccaaa 45423916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 21225032 - 21224963
Alignment:
Q  27 ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatt 96  Q
    ||||||| ||||  ||||||| |||| ||| |||||||||| |||| |||||||||||||||||||||||    
T  21225032 ttggatacactttcttaaaagcgattcttacgagttgatgtcgttttgatagtttgaatcaaaattgatt 21224963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 55087593 - 55087630
Alignment:
Q  59 agttgatgttgtttggatagtttgaatcaaaattgatt 96  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55087593 agttgatgttgtttggatagtttgaatcaaaattgatt 55087630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 35930796 - 35930704
Alignment:
Q  12 atgaattggtttatg-ttggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| |||||| ||||||| |||  | || |||| ||| ||||||||||||  ||||||||| |||| |||||||||||||||||||||    
T  35930796 atgaattgatttatgcttggatacactaatgtataagtcattcttatgagttgataatgtttggatggtttaaatcaaaattgattttgaatg 35930704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 30810018 - 30810069
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaatt 92  Q
    |||||||||||| |||| | |||||| |||||||||||||||||||||||||    
T  30810018 ttaaaagtgattcttataaattgatgatgtttggatagtttgaatcaaaatt 30810069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 14959739 - 14959685
Alignment:
Q  49 gattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||| ||||||||||||||||||| |||  ||||||||||| |||||||||||||    
T  14959739 gatttttatgagttgatgttgtttagatgatttgaatcaaacttgattttgaatg 14959685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 37698485 - 37698519
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgatttt 98  Q
    |||||||||||||||||||||||||||||||||||    
T  37698485 atgttgtttggatagtttgaatcaaaattgatttt 37698519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 44610311 - 44610350
Alignment:
Q  63 gatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  44610311 gatgttgtttggatagtttg-atcaaaattgattttgaatg 44610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 30811329 - 30811290
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  30811329 atgttgtttggatagttttgatcaaaattgattttgaatg 30811290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 53078363 - 53078328
Alignment:
Q  64 atgttgtttggatagtttgaatcaaaattgattttg 99  Q
    |||||||||||| |||||||||||||||||||||||    
T  53078363 atgttgtttggacagtttgaatcaaaattgattttg 53078328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 25848060 - 25847999
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||| ||||| |||||||||  |||||||||||||| |||||| |||||||||||| ||||    
T  25848060 ttaaaaatgattcttatgagtttgtgttgtttggatag-ttgaataaaaattgattttaaatg 25847999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 50664782 - 50664725
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||| ||| ||||| ||||||||| |||||||| ||| |||||||||||||||||    
T  50664782 aagtgattcttaagagtt-atgttgtttagatagtttaaattaaaattgattttgaatg 50664725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 41459099 - 41459039
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||||| |||| | || ||| |||||||||| ||||||| |||||||||||||||||    
T  41459099 taaaagtgattcttatcaattcatggtgtttggataatttgaat-aaaattgattttgaatg 41459039  T

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Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 42475737 - 42475680
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 98  Q
    ||||||| |||| |||||| ||| |||||||||||||  |||||||||||||| ||||    
T  42475737 ttaaaagcgattcttatgaattgttgttgtttggatacattgaatcaaaattgctttt 42475680  T

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Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 33329436 - 33329476
Alignment:
Q  63 gatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||||||||||||||||||  |||||||||| |||||||||    
T  33329436 gatgttgtttggatagtttcgatcaaaattgcttttgaatg 33329476  T

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Target: scaffold0005 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 253156 - 253095
Alignment:
Q  41 ttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  253156 ttaaaagtgattcttatgagttaatgttgtttggatagattgaatcaaaattgattttgaat 253095  T

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Target: scaffold0381 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 9136 - 9077
Alignment:
Q  44 aaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  9136 aaagtgattcttatgagtagatgttgtttggatagtttgaattaaaattgattttgaatg 9077  T

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Target: scaffold0007 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 29199 - 29257
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatg 103  Q
    |||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29199 aagttattcttatgaattgatgttgtttggatagtttgaatcaaaattgattttgaatg 29257  T

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Target: scaffold0983 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 2307 - 2399
Alignment:
Q  8 tgagatgaattggtttatgtt-ggatatacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttg 99  Q
    |||| ||||||| |||||||| ||| | ||||||||||||||| || |||  |||||| ||||||| ||||||||||||||||||||||||||    
T  2307 tgaggtgaattgatttatgtttggacacacttgtttaaaagtggtttttacaagttgacgttgtttagatagtttgaatcaaaattgattttg 2399  T

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Target: scaffold0217 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 2101 - 2161
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaat 102  Q
    ||||||||||| | |||  ||||||||||||||||||||| | ||||||||||||||||||    
T  2101 taaaagtgattatcatggcttgatgttgtttggatagtttaagtcaaaattgattttgaat 2161  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 46790 - 46716
Alignment:
Q  42 taaaagtgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatggaaaataaccaaa 116  Q
    ||||||||||| |||| | || |||||||||||||||||  ||||||||||||||||| ||| | ||| ||||||    
T  46790 taaaagtgatttttatcaattcatgttgtttggatagttcaaatcaaaattgattttggatgtataattaccaaa 46716  T

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Target: scaffold0394 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 5903 - 5966
Alignment:
Q  45 aagtgattgttatgagttgatgttgtttggatag-----tttgaatcaaaattgattttgaatg 103  Q
    |||||||| || || |||||||||||||||||||     |||||||||||||||||||||||||    
T  5903 aagtgattcttgtgggttgatgttgtttggatagtttaatttgaatcaaaattgattttgaatg 5966  T

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