View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_high_11 (Length: 637)

Name: NF21553_high_11
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_high_11
NF21553_high_11
[»] chr1 (5 HSPs)
chr1 (263-337)||(5622067-5622141)
chr1 (114-168)||(5621412-5621466)
chr1 (451-506)||(31915311-31915370)
chr1 (449-506)||(13441896-13441954)
chr1 (474-506)||(50857751-50857783)
[»] chr7 (5 HSPs)
chr7 (447-506)||(1217467-1217527)
chr7 (449-506)||(4303181-4303239)
chr7 (447-506)||(13882990-13883050)
chr7 (332-375)||(8915588-8915631)
chr7 (473-506)||(29175572-29175605)
[»] chr3 (7 HSPs)
chr3 (447-506)||(365858-365918)
chr3 (447-506)||(3064046-3064106)
chr3 (265-337)||(21423440-21423512)
chr3 (122-167)||(21424146-21424191)
chr3 (473-506)||(53012777-53012810)
chr3 (474-506)||(43304265-43304297)
chr3 (474-506)||(43306979-43307011)
[»] chr2 (4 HSPs)
chr2 (449-506)||(31636059-31636117)
chr2 (447-500)||(35681976-35682030)
chr2 (447-506)||(27952632-27952692)
chr2 (447-492)||(22011154-22011200)
[»] chr8 (3 HSPs)
chr8 (447-506)||(22512355-22512415)
chr8 (447-500)||(26377794-26377848)
chr8 (473-506)||(24730820-24730853)
[»] chr5 (2 HSPs)
chr5 (265-337)||(30634654-30634726)
chr5 (122-167)||(30635345-30635390)


Alignment Details
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 5622067 - 5622141
Alignment:
Q  263 gccaaatatcacctttagatgagattattaaatttaaagaaaaatgctgttttcgtattttactggatgagagca 337  Q
    |||||||| |||| ||||||||||| |||||||| || |||||||  ||||||||||||||||||||||||||||    
T  5622067 gccaaatagcacccttagatgagatcattaaattgaaggaaaaatattgttttcgtattttactggatgagagca 5622141  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 5621412 - 5621466
Alignment:
Q  114 ggatgagagagtccactgggtattacataatggtctttatctttctagaagcaca 168  Q
    ||||||| |||||||||||| | |||| ||||| |||||||||||||||||||||    
T  5621412 ggatgagggagtccactggggaatacagaatggcctttatctttctagaagcaca 5621466  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 506
Target Start/End: Original strand, 31915311 - 31915370
Alignment:
Q  451 gagttcttcagaggtggaggagg----tgatgcaggagggttttattagtaattcagtag 506  Q
    |||||||||||||||||||||||    ||||||| ||||||||||||||||||| |||||    
T  31915311 gagttcttcagaggtggaggaggagactgatgcatgagggttttattagtaatttagtag 31915370  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 449 - 506
Target Start/End: Complemental strand, 13441954 - 13441896
Alignment:
Q  449 tcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaattcagtag 506  Q
    |||| |||||||||||||||||||  |||||||| |||||||| ||||||||| |||||    
T  13441954 tcgaattcttcagaggtggaggagactgatgcagaagggttttgttagtaatttagtag 13441896  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 506
Target Start/End: Complemental strand, 50857783 - 50857751
Alignment:
Q  474 tgatgcaggagggttttattagtaattcagtag 506  Q
    ||||||||||||||||||||||||||| |||||    
T  50857783 tgatgcaggagggttttattagtaatttagtag 50857751  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 1217527 - 1217467
Alignment:
Q  447 ggtcgagttcttcagaggtggaggagg-tgatgcaggagggttttattagtaattcagtag 506  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  1217527 ggtcgagttcttcaaaggtggaggagactgatgcaggagggttttattagtaattcagtag 1217467  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 506
Target Start/End: Original strand, 4303181 - 4303239
Alignment:
Q  449 tcgagttcttcagaggtggaggagg-tgatgcaggagggttttattagtaattcagtag 506  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||    
T  4303181 tcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaatttagtag 4303239  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 13883050 - 13882990
Alignment:
Q  447 ggtcgagttcttcagaggtggaggagg-tgatgcaggagggttttattagtaattcagtag 506  Q
    |||||||||||| ||||||||| |||  ||||||||||||||||||||||||||| |||||    
T  13883050 ggtcgagttctttagaggtggacgagactgatgcaggagggttttattagtaatttagtag 13882990  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 375
Target Start/End: Complemental strand, 8915631 - 8915588
Alignment:
Q  332 agagcaccccaatatatgtaaagccacggttggtatccataact 375  Q
    |||||||||||||||||||||||||||  ||||||||| |||||    
T  8915631 agagcaccccaatatatgtaaagccacaattggtatccttaact 8915588  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 29175572 - 29175605
Alignment:
Q  473 gtgatgcaggagggttttattagtaattcagtag 506  Q
    |||||||||||||||||||||||||||| |||||    
T  29175572 gtgatgcaggagggttttattagtaatttagtag 29175605  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 365918 - 365858
Alignment:
Q  447 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaattcagtag 506  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||| |||||    
T  365918 ggtcgagttcttcagaggtggaggagattgatgcaggaggattttattagtaatttagtag 365858  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 3064106 - 3064046
Alignment:
Q  447 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaattcagtag 506  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| |||||    
T  3064106 ggtcgagttcttcagaggtggaggagactgatgcaggagggttttgttagtaatttagtag 3064046  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 21423512 - 21423440
Alignment:
Q  265 caaatatcacctttagatgagattattaaatttaaagaaaaatgctgttttcgtattttactggatgagagca 337  Q
    |||||| |||| |||||||| || |||||||| || |||||||   | |||||||||||||||||||||||||    
T  21423512 caaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagca 21423440  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 21424191 - 21424146
Alignment:
Q  122 gagtccactgggtattacataatggtctttatctttctagaagcac 167  Q
    |||||||||||| | |||| ||||| ||||||||||||||||||||    
T  21424191 gagtccactggggaatacagaatggcctttatctttctagaagcac 21424146  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 53012777 - 53012810
Alignment:
Q  473 gtgatgcaggagggttttattagtaattcagtag 506  Q
    |||||||||||||||||||||||||||| |||||    
T  53012777 gtgatgcaggagggttttattagtaatttagtag 53012810  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 506
Target Start/End: Complemental strand, 43304297 - 43304265
Alignment:
Q  474 tgatgcaggagggttttattagtaattcagtag 506  Q
    ||||||||||||||||||||||||||| |||||    
T  43304297 tgatgcaggagggttttattagtaatttagtag 43304265  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 506
Target Start/End: Complemental strand, 43307011 - 43306979
Alignment:
Q  474 tgatgcaggagggttttattagtaattcagtag 506  Q
    ||||||||||||||||||||||||||| |||||    
T  43307011 tgatgcaggagggttttattagtaatttagtag 43306979  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 506
Target Start/End: Original strand, 31636059 - 31636117
Alignment:
Q  449 tcgagttcttcagaggtggaggagg-tgatgcaggagggttttattagtaattcagtag 506  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||    
T  31636059 tcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaatttagtag 31636117  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 35681976 - 35682030
Alignment:
Q  447 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaatt 500  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  35681976 ggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatt 35682030  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 27952692 - 27952632
Alignment:
Q  447 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaattcagtag 506  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||| |||||    
T  27952692 ggtcgagttcttcagaggtggaggagactgatgtaggagggttttattaataatttagtag 27952632  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 492
Target Start/End: Original strand, 22011154 - 22011200
Alignment:
Q  447 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttat 492  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  22011154 ggtcgagttctttagaggtggaggagagtgatgcaggagggttttat 22011200  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 22512415 - 22512355
Alignment:
Q  447 ggtcgagttcttcagaggtggaggagg-tgatgcaggagggttttattagtaattcagtag 506  Q
    |||||||||||| |||||||||||||  ||||||||||| ||||||||||||||| |||||    
T  22512415 ggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 22512355  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 26377794 - 26377848
Alignment:
Q  447 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaatt 500  Q
    |||||||||||||| |||||||||||  ||||| ||||||||||| |||||||||    
T  26377794 ggtcgagttcttcaaaggtggaggagactgatgtaggagggttttcttagtaatt 26377848  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 24730820 - 24730853
Alignment:
Q  473 gtgatgcaggagggttttattagtaattcagtag 506  Q
    |||||||||||||||||||||||||||| |||||    
T  24730820 gtgatgcaggagggttttattagtaatttagtag 24730853  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 30634726 - 30634654
Alignment:
Q  265 caaatatcacctttagatgagattattaaatttaaagaaaaatgctgttttcgtattttactggatgagagca 337  Q
    |||||| |||| |||||||| || |||||||| || |||||||   | |||||||||||||||||||||||||    
T  30634726 caaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagca 30634654  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 30635390 - 30635345
Alignment:
Q  122 gagtccactgggtattacataatggtctttatctttctagaagcac 167  Q
    |||||||||||| | |||| ||||| ||||||||||||||||||||    
T  30635390 gagtccactggggaatacagaatggcctttatctttctagaagcac 30635345  T

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