View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_high_14 (Length: 612)

Name: NF21553_high_14
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_high_14
NF21553_high_14
[»] chr1 (5 HSPs)
chr1 (37-595)||(52470370-52470927)
chr1 (117-497)||(22093529-22093912)
chr1 (214-282)||(40239803-40239871)
chr1 (5-37)||(19757959-19757991)
chr1 (5-37)||(33324223-33324255)
[»] chr6 (4 HSPs)
chr6 (246-595)||(34179541-34179890)
chr6 (120-251)||(34178110-34178244)
chr6 (220-283)||(10920958-10921021)
chr6 (4-37)||(31946492-31946525)
[»] chr2 (5 HSPs)
chr2 (117-466)||(41325302-41325654)
chr2 (373-459)||(32271069-32271155)
chr2 (234-341)||(28917211-28917318)
chr2 (234-341)||(32617548-32617655)
chr2 (4-37)||(35658382-35658415)
[»] chr8 (3 HSPs)
chr8 (231-595)||(26658554-26658918)
chr8 (358-428)||(33694317-33694387)
chr8 (265-341)||(30906225-30906301)
[»] chr7 (6 HSPs)
chr7 (236-355)||(7725897-7726016)
chr7 (233-303)||(3784495-3784565)
chr7 (236-355)||(45670539-45670658)
chr7 (558-591)||(39474220-39474253)
chr7 (234-319)||(47923293-47923378)
chr7 (264-320)||(23055436-23055492)
[»] chr4 (2 HSPs)
chr4 (266-419)||(26442525-26442678)
chr4 (230-344)||(50416300-50416414)
[»] scaffold0158 (1 HSPs)
scaffold0158 (236-355)||(26959-27078)
[»] chr3 (3 HSPs)
chr3 (334-469)||(9509446-9509581)
chr3 (334-469)||(9517421-9517556)
chr3 (352-428)||(17619751-17619827)
[»] chr5 (2 HSPs)
chr5 (265-349)||(31765327-31765411)
chr5 (522-590)||(18893363-18893431)


Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 37 - 595
Target Start/End: Complemental strand, 52470927 - 52470370
Alignment:
Q  37 tatgcatgtatttttgaatgatttatttaggaaaatgttaataagtgtcattaaatattaagaagtnnnnnnnnnnnttaaagaagctaaaatgatatat 136  Q
    ||||||| |||||||||||||||||||||| |||||||||| || |||||||||||||||||||||           | |||||||||||||||||||||    
T  52470927 tatgcatatatttttgaatgatttatttagtaaaatgttaacaaatgtcattaaatattaagaagtaaaaaaaaaaat-aaagaagctaaaatgatatat 52470829  T
Q  137 attcatactaacaaaaacgcctctctagcaagacttactaaagaggtcgctcggaatacagagtatctgtcaaaattaacaaaaacaaaagcgggcatta 236  Q
    ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52470828 atttatactaataaaaacgcctctctagcaagacgtactaaagaggtcgctcggaatacagagtatctgtcaaaattaacaaaaacaaaagcggacatta 52470729  T
Q  237 gccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaatttt 336  Q
    |||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52470728 gccgatacccaaataagttaagggattcgaccgccactgctgacaaccaaaaacaaacgtggcattactagccatcaaccaccaataagaatggaatttt 52470629  T
Q  337 accttttcaacaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatcaatt 436  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52470628 accttttcaacaagatccattatggaagagtaaacattattaaagattctattattacgctctttccataatagccaaacacaaaggagccaaatcaatt 52470529  T
Q  437 ggaggaatgatcgacgaatcctcgaaccacctaggtaattaaaaaattgttagaaatgagcacctagactttggtggttgacgcttgaaacacctatcca 536  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52470528 ggaggaatgatcaacgaatcctcgaaccacctaggtaattaaaaaattgttagaaatgagcacctagactttggtggttgacgcttgaaacacctatcca 52470429  T
Q  537 taactaaacctgctgccaaagagatccgaaaatgtcacagtgaagaaacaaatgttgag 595  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  52470428 taactaaacctgctgccaaagtgatccgaaaatgtcacaatgaagaaacaaatgttgag 52470370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 117 - 497
Target Start/End: Complemental strand, 22093912 - 22093529
Alignment:
Q  117 aagaagctaaaatgatatatattcatactaacaaaaacgcctctctagcaa--gacttactaaagaggtcgctcggaatacagagtatctgtcaaa-att 213  Q
    ||||||| || |||||||||||||| |||| |||| |||||||| |||||   ||| ||||||||||||| |||   ||||| ||||||| ||||| |||    
T  22093912 aagaagcaaatatgatatatattcacactatcaaagacgcctctttagcacatgacgtactaaagaggtcactcaagatacaaagtatctttcaaatatt 22093813  T
Q  214 aacaaaaacaaaagcgggcattagccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatca 313  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| | ||||||| ||| ||||| ||||| |||    
T  22093812 aacaaaaacaaaagcaggcattagccgatacccaaacaagctaagggatccgaccgccactgttgacaaccataaacaaaagtgacattattagccctca 22093713  T
Q  314 accaccaataacaatggaattttaccttttcaacaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtca 413  Q
    ||||||||||| |||| |||||||||||||| ||||||||| | ||||||| ||||  ||||||||  |||||||| ||| | |||||||||| ||| ||    
T  22093712 accaccaataagaatgaaattttaccttttccacaagatccgtaatggaagtgtaagtattattaaaaattctattgttatgttctttccatattagcca 22093613  T
Q  414 aacacaaaggagccaaatcaattggaggaatgatcgacgaatcctcgaaccacctaggtaattaaaaaattgttagaaatgagc 497  Q
    ||||||||||||||||||||| |||||||||||||||||| || |||||||||||  |||||||  ||||||  ||||||||||    
T  22093612 aacacaaaggagccaaatcaaatggaggaatgatcgacgagtcttcgaaccacctgtgtaattagtaaattggaagaaatgagc 22093529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 40239803 - 40239871
Alignment:
Q  214 aacaaaaacaaaagcgggcattagccgatactcaaacaagttaagggatccgaccgccactgctgacaa 282  Q
    ||||||||||||||  |||||||| |||||| ||||||| | || |||| ||||||||||||| |||||    
T  40239803 aacaaaaacaaaagtaggcattagtcgatacccaaacaaatcaacggattcgaccgccactgccgacaa 40239871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 19757959 - 19757991
Alignment:
Q  5 tggtttcgcgtccgtacgcgggttcgctgggtt 37  Q
    |||||||||| ||||||||||||||||||||||    
T  19757959 tggtttcgcgcccgtacgcgggttcgctgggtt 19757991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 33324223 - 33324255
Alignment:
Q  5 tggtttcgcgtccgtacgcgggttcgctgggtt 37  Q
    ||||||||||| |||||||||||||||||||||    
T  33324223 tggtttcgcgttcgtacgcgggttcgctgggtt 33324255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 246 - 595
Target Start/End: Original strand, 34179541 - 34179890
Alignment:
Q  246 caaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttaccttttca 345  Q
    |||||||| ||||||||   ||||||||| |||||||| ||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||| |||||    
T  34179541 caaacaagctaagggatttaaccgccactactgacaaccaaaaacaaacgtgacattattagccctcaaccaccaataagaatggaattttaccctttca 34179640  T
Q  346 acaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatcaattggaggaatg 445  Q
    ||||||||  ||||||||| ||||||||| ||||  ||| |||||||| |||||||||| | ||||||||||||||||||||||||||||| |||||||     
T  34179641 acaagatctgttatggaagtgtaaacatttttaaaaattttattattatgctctttccaaattagtcaaacacaaaggagccaaatcaattcgaggaata 34179740  T
Q  446 atcgacgaatcctcgaaccacctaggtaattaaaaaattgttagaaatgagcacctagactttggtggttgacgcttgaaacacctatccataactaaac 545  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||| ||| | ||||||||||| |||||||  |||    
T  34179741 atcgacgagtcctcgaaccacctaggtaattagaaaattgtaagaaatgagaacctacactttggtggtcgactcctgaaacacctagccataaccgaac 34179840  T
Q  546 ctgctgccaaagagatccgaaaatgtcacagtgaagaaacaaatgttgag 595  Q
    ||||||||||| |||||||||| |||| || |||||||||||||||||||    
T  34179841 ctgctgccaaatagatccgaaattgtcgcaatgaagaaacaaatgttgag 34179890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 34178110 - 34178244
Alignment:
Q  120 aagctaaaatgatatatattcatactaacaaaaacgcctctctagca--agacttactaaagaggtcgctcggaatacagagtatctgtcaaa-attaac 216  Q
    |||| |||||| |||||||| | | ||||||| ||||| ||||| ||  |||| |||||||||||| ||||  |||||||||||||||||||| ||||||    
T  34178110 aagcaaaaatggtatatatttacaataacaaagacgccgctctaacacaagacgtactaaagaggttgctcataatacagagtatctgtcaaatattaac 34178209  T
Q  217 aaaaacaaaagcgggcattagccgatactcaaaca 251  Q
    |||||||||||| | |||||| |||||| ||||||    
T  34178210 aaaaacaaaagcagacattagtcgatacccaaaca 34178244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 10921021 - 10920958
Alignment:
Q  220 aacaaaagcgggcattagccgatactcaaacaagttaagggatccgaccgccactgctgacaac 283  Q
    |||||||||  ||||||||| |||| |||||||  ||| |||| ||||||||||||||||||||    
T  10921021 aacaaaagcaagcattagccaatacccaaacaaagtaacggattcgaccgccactgctgacaac 10920958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 31946492 - 31946525
Alignment:
Q  4 ttggtttcgcgtccgtacgcgggttcgctgggtt 37  Q
    ||||||||||| ||||||||||||||||||||||    
T  31946492 ttggtttcgcgcccgtacgcgggttcgctgggtt 31946525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 117 - 466
Target Start/End: Complemental strand, 41325654 - 41325302
Alignment:
Q  117 aagaagctaaaatgatatatattcatactaacaaaaacgcctctctagca--agacttactaaagaggtcgctcggaatacagagtatctgtcaaa-att 213  Q
    ||||||| |||||  ||||||||||||||| | ||| ||||||| |||||  |||| |||||||||||||||||  |||||| ||| ||||||| | | |    
T  41325654 aagaagcaaaaatcgtatatattcatactatcgaaa-cgcctctttagcacaagacgtactaaagaggtcgctcaaaatacaaagtgtctgtcagataat 41325556  T
Q  214 aacaaaaaca-aaagcgggcattagccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatc 312  Q
    |||||||||| |||||  ||||||||||||||  |||||||  || |  ||||||| ||||||| |||||| | | || || |||| |||| || || ||    
T  41325555 aacaaaaacataaagcatgcattagccgatacctaaacaagacaacgagtccgaccaccactgccgacaaccatatactaaagtggtattattaaccctc 41325456  T
Q  313 aaccaccaataacaatggaattttaccttttcaacaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtc 412  Q
    |||||||||||  |||| |||||||||||||  ||||| ||| | ||| ||| ||||  ||||||||  |||||||| ||||| ||||| |||| ||| |    
T  41325455 aaccaccaatataaatgaaattttacctttttcacaagctccgtaatgaaagtgtaagtattattaaatattctattgttacgttcttttcatattagcc 41325356  T
Q  413 aaacacaaaggagccaaatcaattggaggaatgatcgacgaatcctcgaaccac 466  Q
    ||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||||    
T  41325355 aaatacaaaggagtcaaatcaattggaggaatgatcgacgagtcctcaaaccac 41325302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 459
Target Start/End: Original strand, 32271069 - 32271155
Alignment:
Q  373 ttattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatcaattggaggaatgatcgacgaatcctc 459  Q
    |||||||  |||||||||||||| |||||||| | ||  |||||||||||||||||||  || ||||| || ||||||||| |||||    
T  32271069 ttattaaatattctattattacgttctttccacactaaacaaacacaaaggagccaaagtaactggagaaacgatcgacgagtcctc 32271155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 28917318 - 28917211
Alignment:
Q  234 ttagccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaat 333  Q
    ||||||||||| || ||| || ||||| | |||||  |||||| |||||| ||||||||| | ||||||| || || |||||||||||||  |||| |||    
T  28917318 ttagccgatacccagacatgtcaaggggttcgaccatcactgcggacaaccaaaaacaaaagaggcattattaaccttcaaccaccaataggaatgaaat 28917219  T
Q  334 tttacctt 341  Q
    || |||||    
T  28917218 ttaacctt 28917211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 341
Target Start/End: Original strand, 32617548 - 32617655
Alignment:
Q  234 ttagccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaat 333  Q
    ||||||||||| || ||| || || || | ||||| |||||||||||||| ||||||||| | ||||||| |||||  ||||||||| ||  |||| |||    
T  32617548 ttagccgatacccagacatgtcaatgggttcgaccaccactgctgacaaccaaaaacaaaagcggcattattagcctgcaaccaccagtaggaatgaaat 32617647  T
Q  334 tttacctt 341  Q
    || |||||    
T  32617648 ttaacctt 32617655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 35658382 - 35658415
Alignment:
Q  4 ttggtttcgcgtccgtacgcgggttcgctgggtt 37  Q
    ||||||||||||||||||||||||||||| ||||    
T  35658382 ttggtttcgcgtccgtacgcgggttcgctaggtt 35658415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 231 - 595
Target Start/End: Original strand, 26658554 - 26658918
Alignment:
Q  231 gcattagccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatgg 330  Q
    |||||||||||||| ||||||||  || |  ||||||| |||||||||||||| | | || || ||| ||||| ||||  |||||||||| ||  ||||     
T  26658554 gcattagccgatacccaaacaagacaacgagtccgaccaccactgctgacaaccatatactaaagtgacattattagctctcaaccaccagtataaatga 26658653  T
Q  331 aattttaccttttcaacaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaa 430  Q
    |||||||||||||| | ||| ||| | ||||||| |||   ||||||||  | |||||||||||| || ||||| | ||  ||||||||||| |||||||    
T  26658654 aattttaccttttccataagctccgtaatggaagtgtatgaattattaaatagtctattattacgttcattccacactaaccaaacacaaagaagccaaa 26658753  T
Q  431 tcaattggaggaatgatcgacgaatcctcgaaccacctaggtaattaaaaaattgttagaaatgagcacctagactttggtggttgacgcttgaaacacc 530  Q
      || ||||| |||||||||| |  |||| | ||||||| |||||||| ||||||  | || |||||||  |||||||| || |  || | |||||||||    
T  26658754 gtaactggagaaatgatcgacaagccctcaagccacctaagtaattaataaattggaaaaagtgagcacaaagactttgatgatcaacacctgaaacacc 26658853  T
Q  531 tatccataactaaacctgctgccaaagagatccgaaaatgtcacagtgaagaaacaaatgttgag 595  Q
     | ||| |||| ||| ||||| ||||| || || ||||| ||||| |||||||||| ||||||||    
T  26658854 aagccacaactgaacttgctgtcaaagggagccaaaaatatcacaatgaagaaacagatgttgag 26658918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 428
Target Start/End: Original strand, 33694317 - 33694387
Alignment:
Q  358 atggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagcca 428  Q
    |||||||| | |||||||||||  |||||||||||||| ||||||||||  ||||| |||||||| |||||    
T  33694317 atggaagaatgaacattattaaaaattctattattacgttctttccatatgagtcacacacaaagaagcca 33694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 30906225 - 30906301
Alignment:
Q  265 gaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttacctt 341  Q
    ||||||||||||||||||| ||||||||| | ||||||| ||||   ||||||||||||  | |||||||| |||||    
T  30906225 gaccgccactgctgacaaccaaaaacaaatgcggcattattagcatgcaaccaccaataggagtggaatttaacctt 30906301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 7725897 - 7726016
Alignment:
Q  236 agccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattt 335  Q
    ||||||||| |||||||||||| || ||||||| ||| |||||||||| |||||| ||    |||||| ||||| |||||||||||||  |||| |||||    
T  7725897 agccgatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcagcattattagccttcaaccaccaatatgaatgaaattt 7725996  T
Q  336 taccttttcaacaagatcca 355  Q
     |||||||||| ||| ||||    
T  7725997 aaccttttcaataagctcca 7726016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 3784495 - 3784565
Alignment:
Q  233 attagccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcatta 303  Q
    |||||||||||| ||||||||| || |||| ||||| ||||||||||||||||  ||||||  ||||||||    
T  3784495 attagccgatacccaaacaagtcaaaggattcgaccaccactgctgacaactatgaacaaaaatggcatta 3784565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 45670539 - 45670658
Alignment:
Q  236 agccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattt 335  Q
    ||||||||| |||||||  ||| || | ||||||||||||||||||||  |||||||| || |||||| | ||| | |||||||  ||  |||| |||||    
T  45670539 agccgatacccaaacaaactaacgggttcgaccgccactgctgacaaccgaaaacaaaagttgcattatttgcctttaaccaccggtatgaatgaaattt 45670638  T
Q  336 taccttttcaacaagatcca 355  Q
     |||||||||| ||| ||||    
T  45670639 gaccttttcaataagctcca 45670658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 591
Target Start/End: Complemental strand, 39474253 - 39474220
Alignment:
Q  558 agatccgaaaatgtcacagtgaagaaacaaatgt 591  Q
    |||||||||||||||||| |||||||||||||||    
T  39474253 agatccgaaaatgtcacaatgaagaaacaaatgt 39474220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 47923293 - 47923378
Alignment:
Q  234 ttagccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccacc 319  Q
    ||||||||||| || ||| || ||||| | ||||| || ||||||||| | ||||||||| | ||||||| ||||| |||||||||    
T  47923293 ttagccgatacccagacatgtcaaggggttcgaccaccgctgctgacacccaaaaacaaaagaggcattattagccctcaaccacc 47923378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 23055492 - 23055436
Alignment:
Q  264 cgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccacca 320  Q
    ||||| |||||||||||| | ||||||||| | ||||||| ||||| ||||||||||    
T  23055492 cgaccaccactgctgacacccaaaaacaaaagaggcattattagccctcaaccacca 23055436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 419
Target Start/End: Complemental strand, 26442678 - 26442525
Alignment:
Q  266 accgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttaccttttcaacaagatccattatggaaga 365  Q
    |||||||||||| ||| | | ||||||| | ||| ||| | ||| | |||||||||||  |||| ||||| ||||||||   ||| ||||| ||||||||    
T  26442678 accgccactgctcacagccataaacaaaagaggcgttatttgcctttaaccaccaataggaatgaaatttaaccttttctgtaagctccataatggaaga 26442579  T
Q  366 gtaaacattattaacgattctattattacgctctttccataatagtcaaacaca 419  Q
     | |||||||||||  ||||||||||| || |||||||| |  |||||||||||    
T  26442578 atgaacattattaaaaattctattattgcgttctttccaaatgagtcaaacaca 26442525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 344
Target Start/End: Complemental strand, 50416414 - 50416300
Alignment:
Q  230 ggcattagccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatg 329  Q
    |||||||| |||||| |||||||   || || | |||||||||||||||||||| | | ||||| | ||||||| ||||   ||||||||||||| | ||    
T  50416414 ggcattagtcgatacccaaacaaagcaacgggttcgaccgccactgctgacaaccatacacaaatgcggcattattagcacgcaaccaccaataagagtg 50416315  T
Q  330 gaattttaccttttc 344  Q
    ||| || ||||||||    
T  50416314 gaacttaaccttttc 50416300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 26959 - 27078
Alignment:
Q  236 agccgatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattt 335  Q
    ||||||||| |||||||||||| || | ||||| ||||| |||| ||| | ||||||| | ||||||| ||||| |||||||||| ||  |||| || ||    
T  26959 agccgatacccaaacaagttaacgggtacgaccaccactcctgagaaccataaacaaaagcggcattattagccttcaaccaccagtatgaatgaaactt 27058  T
Q  336 taccttttcaacaagatcca 355  Q
     |||||||||| ||| ||||    
T  27059 aaccttttcaataagctcca 27078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 469
Target Start/End: Original strand, 9509446 - 9509581
Alignment:
Q  334 tttaccttttcaacaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatca 433  Q
    ||||||||||| | ||||  | | |||||||  |||||||||||||  ||| |||||||||| ||||||||||  || ||||||||||| ||||| |  |    
T  9509446 tttaccttttccataagactcgtaatggaagtataaacattattaaaaattatattattacgttctttccatatgagccaaacacaaagaagccacagta 9509545  T
Q  434 attggaggaatgatcgacgaatcctcgaaccaccta 469  Q
    |  | |||||||||| |||| ||||||| |||||||    
T  9509546 acagaaggaatgatctacgactcctcgagccaccta 9509581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 469
Target Start/End: Original strand, 9517421 - 9517556
Alignment:
Q  334 tttaccttttcaacaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatca 433  Q
    ||||||||||| | ||||  | | |||||||  |||||||||||||  ||| |||||||||| ||||||||||  || ||||||||||| ||||| |  |    
T  9517421 tttaccttttccataagactcgtaatggaagtataaacattattaaaaattatattattacgttctttccatatgagccaaacacaaagaagccacagta 9517520  T
Q  434 attggaggaatgatcgacgaatcctcgaaccaccta 469  Q
    |  | |||||||||| |||| ||||||| |||||||    
T  9517521 acagaaggaatgatctacgactcctcgagccaccta 9517556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 428
Target Start/End: Original strand, 17619751 - 17619827
Alignment:
Q  352 tccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagcca 428  Q
    ||||| |||||||| | |||||||||||  |||||||||||||| ||||||||||  || || |||||||| |||||    
T  17619751 tccataatggaagaatgaacattattaaaaattctattattacgttctttccatatgagccacacacaaagaagcca 17619827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 31765327 - 31765411
Alignment:
Q  265 gaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttaccttttcaacaa 349  Q
    ||||||||||||||||||| ||||| ||| | ||||||| ||||   ||||||||||||  | |||||||| ||||| |||||||    
T  31765327 gaccgccactgctgacaaccaaaaataaaagcggcattattagcacgcaaccaccaataggagtggaatttaaccttctcaacaa 31765411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 590
Target Start/End: Original strand, 18893363 - 18893431
Alignment:
Q  522 tgaaacacctatccataactaaacctgctgccaaagagatccgaaaatgtcacagtgaagaaacaaatg 590  Q
    ||||||||| |||||||||   || |||||||| | ||| |||||||||||||||  ||||||||||||    
T  18893363 tgaaacaccaatccataacctgacatgctgccacaaagacccgaaaatgtcacagctaagaaacaaatg 18893431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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