View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_19 (Length: 537)
Name: NF21553_high_19
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 13673108 - 13672602
Alignment:
| Q |
18 |
agataatgcaacccctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacctaacaggttgaacataattgtgttaccta |
117 |
Q |
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| T |
13673108 |
agataatgcaacccctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacctaacaggttgaatataattgtgttaccta |
13673009 |
T |
|
| Q |
118 |
tatcaatgctaatataaaataacaagggatagaaaatggagaagtaagatggaagcagcgctgcgcaccaaataacaaagaagaaagacttccatatggt |
217 |
Q |
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| T |
13673008 |
tatcaatgctaatataaaataacaagggatagaaaatggagaagtaagatggaagcagcgctgcgcaccaaataacaaagaagaaagacttccatatggt |
13672909 |
T |
|
| Q |
218 |
gctaattgtaggacaaagtagaggccgcggtcgataccaaacccgacaaggcgtgtagcgttcgggtgattaacgtgtgcaatgattccaagctctgtta |
317 |
Q |
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| T |
13672908 |
gctaattgtaggacaaagtagaggccgcggtcgataccaaacccaacaaggcgtgtagcgttcgggtgattaacgtgtgcaatgattccaagctctgtta |
13672809 |
T |
|
| Q |
318 |
agaaatcgcctgctctatccgcgaaatccttgtcgttcttcattagtctctttactgcgacaacttgaccatctgataagtgtcctttgtatacttcagc |
417 |
Q |
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| T |
13672808 |
agaaatcgcctgctctatccgcgaaatccttgtcgttcttcattagtctctttactgcgacaacttgaccatctgataagtgtcctttgtatacttcagc |
13672709 |
T |
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| Q |
418 |
atgaccaccttttccaatcaagttctctatgtagcaaaaataccaaacattataagttataataattgttatattatatcaagagttttgaataactgtt |
517 |
Q |
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| T |
13672708 |
atgaccaccttttccaatcaagttctctatgtagcaaaaataccaaacattataagttataataattgttatattatatcaagagttttgaataactgtt |
13672609 |
T |
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| Q |
518 |
actgatg |
524 |
Q |
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| T |
13672608 |
actgatg |
13672602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 446
Target Start/End: Complemental strand, 28531365 - 28531275
Alignment:
| Q |
356 |
ttcattagtctctttactgcgacaacttgaccatctgataagtgtcctttgtatacttcagcatgaccaccttttccaatcaagttctcta |
446 |
Q |
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|||||||| ||||||||||| ||||| ||||| | |||| |||||||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
28531365 |
ttcattagcctctttactgctacaaccattccatcaggtaagcgtcctttgtacacttctgcatgaccaccttttccaatcatgttctcta |
28531275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 40114763 - 40114800
Alignment:
| Q |
401 |
cctttgtatacttcagcatgaccaccttttccaatcaa |
438 |
Q |
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| T |
40114763 |
cctttgtacacttcagcataaccaccttttccaatcaa |
40114800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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