View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_23 (Length: 510)
Name: NF21553_high_23
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 25 - 506
Target Start/End: Original strand, 50632807 - 50633288
Alignment:
| Q |
25 |
agttgaataaaccttaaatttagtcattgaactatcactcttttcaatttagttcctaagttatataattataataaacagttccgaattccgttacttt |
124 |
Q |
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| T |
50632807 |
agttgaataaaccttaaatttagtcattgaactatcactcttttcaatctagttcctaagttatataagtataataaacagttccgaattccgttaattt |
50632906 |
T |
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| Q |
125 |
attttcaaagtatatgaaaattcatcactttaatccctagcatagactaaattgatggattttatgcacatcatggactgcttatcatatttatattgtt |
224 |
Q |
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| T |
50632907 |
attttcaaagtatatgaaaattcatcaatttaatccctatcatagactaaattgatggattttatgcacatcatggactgcttatcatatttatattgtt |
50633006 |
T |
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| Q |
225 |
taggaacaatgtcgcaatgatagttatggacttctctactaattaggtttatactgtttaggtacaatgatactcaaaatgttattataattaaaatctg |
324 |
Q |
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| T |
50633007 |
taggaacaatgtcacaatgatagttatggacttctctactaattagatttatactgtttaggtacaatgatactcgaaatgttattataattaaaatctg |
50633106 |
T |
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| Q |
325 |
ttttttctttcaaagtagaagttgaatttgagacggacttattatagaacaacattggttcaacttgttagtttataatggttgaaatttgtggatgcag |
424 |
Q |
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| T |
50633107 |
ttttttctttcaaagtagaagttgaatttgagacgttcttattatagaacaacattggttcaacttgttagtttataatggttgaaatttgtggatgcag |
50633206 |
T |
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| Q |
425 |
aactacaacatttatcttcccttgaaattagaagtcaaatttttgataaaaattgaaaccaacttattataggacacctttg |
506 |
Q |
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| T |
50633207 |
aactacaacatttatcttcccttcaaagtagaaatcaaatttttgataaaaattgaaaccaacttattataggacacctttg |
50633288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 430
Target Start/End: Original strand, 50633268 - 50633337
Alignment:
| Q |
361 |
acttattatagaacaacattggttcaacttgttagtttataatggttgaaatttgtggatgcagaactac |
430 |
Q |
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| T |
50633268 |
acttattataggacacctttgatttgacttgttagtttataatggttgaaatttttggttgcagaactac |
50633337 |
T |
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