View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_31 (Length: 459)
Name: NF21553_high_31
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 10119726 - 10120111
Alignment:
| Q |
17 |
tgaacaagataacatcactgaaaataatgaatgaatcatgaaatgaaaatatagggacggttataacatggttgagtgtttgatattttacattgcttta |
116 |
Q |
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| T |
10119726 |
tgaacaagataacatcactgaaaataatgaatgaatcatgcaatgaaaatatagggacggttataacatggttgagtgtttgatattttacattgcttta |
10119825 |
T |
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| Q |
117 |
aagatata----acggtttaatagaaatatggcgctttgcg-ttccttttgcttgtaccaaaagcaacactccttctctctttgttttcatctaaatctt |
211 |
Q |
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| T |
10119826 |
aagatatatataacggtttaatagaaatatggcgctttgcggttccttttgcttgtaccaaaagcaacactccttctctctttgttttcatctaaatctt |
10119925 |
T |
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| Q |
212 |
tttcccactactactttcctttactcctactactccacgttttgccattctttttgttattatatataaataatctcattcaattaagacaacacaagaa |
311 |
Q |
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| T |
10119926 |
tttcccactactactttcctttactcccactactccacgttttgccattctttttgttgttatatataaataatctcattcaattaagacaacacaagaa |
10120025 |
T |
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| Q |
312 |
accaacgttatacatgacacatactcacatgctaatgttacaactgcaaccaagattctgcttctaacttctaattaatcatcatc |
397 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10120026 |
actaacgttatacatgacacataatcacatgctaatgttacaactgcaaccaagattctgcttctaacttctaattaatcatcatc |
10120111 |
T |
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