View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_high_32 (Length: 456)

Name: NF21553_high_32
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_high_32
NF21553_high_32
[»] chr4 (18 HSPs)
chr4 (18-440)||(5502328-5502750)
chr4 (18-448)||(5356574-5356998)
chr4 (25-147)||(5467807-5467929)
chr4 (18-141)||(5346180-5346303)
chr4 (20-147)||(5412855-5412982)
chr4 (17-141)||(5423496-5423620)
chr4 (316-443)||(5363306-5363433)
chr4 (18-141)||(5354761-5354884)
chr4 (25-147)||(5393406-5393528)
chr4 (25-130)||(5379117-5379222)
chr4 (259-443)||(5412571-5412755)
chr4 (301-443)||(5468071-5468213)
chr4 (301-443)||(5393122-5393264)
chr4 (301-443)||(5378804-5378946)
chr4 (281-443)||(5423760-5423922)
chr4 (301-368)||(5346460-5346527)
chr4 (301-368)||(5354534-5354601)
chr4 (301-359)||(5401431-5401489)
[»] chr5 (2 HSPs)
chr5 (17-141)||(20329282-20329406)
chr5 (281-443)||(20328980-20329142)
[»] chr7 (1 HSPs)
chr7 (394-439)||(25789205-25789250)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 5502750 - 5502328
Alignment:
Q  18 ctcatcaggtattggcccctccaaatagttgcttgacatatccacataagtgaaggccatttggattttgacatacttcatttgatgacctttgttgaca 117  Q
    |||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5502750 ctcatcaggtattggcccttccaagtaattgtttgacatatccacataagtgaaggccatttggattttgacatacttcatttgttgacctttgttgaca 5502651  T
Q  118 ataataattgaatcctgataacgagtaagatctatctcaaccaaattattatcaactaattcctgtttaaggttagaaggaggcatgcttgcaagtagtt 217  Q
    |||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||    
T  5502650 ataataattgaatcctgataacgagtgatatctatctcaaccaaaatattatcaactaattcttgtttaaggttagaagtagacatgcttgcaagtagtt 5502551  T
Q  218 taagcaatgtcattgcgagaaatttgttaaaacctgataataaagccttcaaagtcaaaggacgatagttatcgtagatttccaaaaacaaatggccaaa 317  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||    
T  5502550 taagcaatgtcattttgagaaatttgttaaaacatgataataaagccttcaaagtcaaaggacgatagttagcatagattttcaaaaacaaatggccaaa 5502451  T
Q  318 ttctggcccaagcatgccttcatcacgcatcattgccttccaactgtttaacaatgttcctggtatcatgccactaaagttatttgaagctagatcgaca 417  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  5502450 ttctggcccaagcatgccttcatcacgcttcattgccttccaactgtttaacaatgttcctggtatcatgccactaaagctatttgatgctagatcgaca 5502351  T
Q  418 atatgaagcatctcccaatcacc 440  Q
    ||||||||||| |||||||||||    
T  5502350 atatgaagcatatcccaatcacc 5502328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 5356998 - 5356574
Alignment:
Q  18 ctcatcaggtattggcccctccaaatagttgcttgacatatccacataagtgaaggccatttggattttgacatacttcatttgatgacctttgttgaca 117  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||  ||||||||| ||||||||||   |||||||||||||    
T  5356998 ctcatcaggtattggcccctccaaatagttgtttgatatatccacataagtgaatgccatttcaattttgacaaacttcatttgtctacctttgttgaca 5356899  T
Q  118 ataataattgaatcctgataacgagtaagatctatctcaaccaaattattatcaactaattcctgtttaaggttagaaggaggcatgcttgcaagtagtt 217  Q
    | ||||||||| || |||||| ||  ||||||     |||  |  ||| ||||| | ||  | || | || | ||||  |||  ||| | ||||  ||||    
T  5356898 acaataattgagtcttgataatgatcaagatc-----caatgag-ttaatatcagcaaaaccttgatcaacgatagagagagaaatgttcgcaacaagtt 5356805  T
Q  218 taagcaatgtcattgcgagaaatttgttaaaacctgataataaagccttcaaagtcaaaggacgatagttatcgtagatttccaaaaacaaatggccaaa 317  Q
    |||||||| ||| ||| ||| ||||||| |||  || ||||| |||||  ||| ||| |||| |  ||||||||   ||||| ||| ||||||| ||||     
T  5356804 taagcaatttcagtgcaagatatttgttcaaatgtggtaatatagcctggaaactcataggatggaagttatcgacaatttcaaaatacaaatgaccaag 5356705  T
Q  318 ttctggcccaagcatgccttcatcacgcatcattgccttccaactgtttaacaatgttcctggtatcatgccactaaagttatttgaagctagatcgaca 417  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||| ||||||||||| |||| |||  |||| || || ||||| || |||| ||| |||    
T  5356704 ttctggcccaagcacacctccatcacgcatcattgccttccaactttttaacaatgtacctgatattgtgccgctcaaattattggaggctatatctaca 5356605  T
Q  418 atatgaagcatctcccaatcaccagtattat 448  Q
    |||||||||||||||||||||||||| ||||    
T  5356604 atatgaagcatctcccaatcaccagtgttat 5356574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 5467807 - 5467929
Alignment:
Q  25 ggtattggcccctccaaatagttgcttgacatatccacataagtgaaggccatttggattttgacatacttcatttgatgacctttgttgacaataataa 124  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||  |||| |||||||||  |||||| |||||||||||||||||||||||||    
T  5467807 ggtattggcccctctaaatagttgcttgacatatcaacataagtgaaggcactttgaattttgacaagcttcatctgatgacctttgttgacaataataa 5467906  T
Q  125 ttgaatcctgataacgagtaaga 147  Q
    ||||||| |||||||||| ||||    
T  5467907 ttgaatcttgataacgagcaaga 5467929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 5346180 - 5346303
Alignment:
Q  18 ctcatcaggtattggcccctccaaatagttgcttgacatatccacataagtgaaggccatttggattttgacatacttcatttgatgacctttgttgaca 117  Q
    ||||| ||||||||| |||||||| || ||| |||||||||||||||||||||||||| |||||| |||||||  |||||| |||||||||||||| |||    
T  5346180 ctcattaggtattggtccctccaagtaattgtttgacatatccacataagtgaaggccttttggactttgacaagcttcatctgatgacctttgttaaca 5346279  T
Q  118 ataataattgaatcctgataacga 141  Q
    ||||||| ||||||||||||||||    
T  5346280 ataataactgaatcctgataacga 5346303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 5412982 - 5412855
Alignment:
Q  20 catcaggtattggcccctccaaatagttgcttgacatatccacataagtgaaggccatttggattttgacatacttcatttgatgacctttgttgacaat 119  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||||||||||   |||| |||||||||   |||||||| |||||||||||||||||    
T  5412982 catcaggtattggcccccccaaatagttgcttgacatatcaacgtaagtgaaggtactttgaattttgacaacattcatttgctgacctttgttgacaat 5412883  T
Q  120 aataattgaatcctgataacgagtaaga 147  Q
    |||||||| |||||||||||||| ||||    
T  5412882 aataattgtatcctgataacgagcaaga 5412855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 5423496 - 5423620
Alignment:
Q  17 actcatcaggtattggcccctccaaatagttgcttgacatatccacataagtgaaggccatttggattttgacatacttcatttgatgacctttgttgac 116  Q
    |||||||||||||| | ||||| || || |||||||||||||||||||||||||| ||| |||| | |||||||  |||||| |||||||||||||||||    
T  5423496 actcatcaggtatttgtccctctaagtaattgcttgacatatccacataagtgaaagccgtttgaactttgacaagcttcatctgatgacctttgttgac 5423595  T
Q  117 aataataattgaatcctgataacga 141  Q
    |||||||||||| ||||||||||||    
T  5423596 aataataattgactcctgataacga 5423620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 316 - 443
Target Start/End: Complemental strand, 5363433 - 5363306
Alignment:
Q  316 aattctggcccaagcatgccttcatcacgcatcattgccttccaactgtttaacaatgttcctggtatcatgccactaaagttatttgaagctagatcga 415  Q
    ||||||||||||| ||   ||||||||||||||||||| |||||||||||||| | || | ||| ||||||||||||||||||||| ||  ||||||| |    
T  5363433 aattctggcccaaacacatcttcatcacgcatcattgctttccaactgtttaagagtgatgctgatatcatgccactaaagttattggagcctagatcaa 5363334  T
Q  416 caatatgaagcatctcccaatcaccagt 443  Q
    ||||||||||||||| ||||||||||||    
T  5363333 caatatgaagcatcttccaatcaccagt 5363306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 5354884 - 5354761
Alignment:
Q  18 ctcatcaggtattggcccctccaaatagttgcttgacatatccacataagtgaaggccatttggattttgacatacttcatttgatgacctttgttgaca 117  Q
    ||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||||  |||| ||||| ||    ||||| || ||||| |||||||||    
T  5354884 ctcataaggtattggcccctccaaatagttgtttgacatatctatataagtgaaggcactttgaatttttaccaggttcatctgttgacccttgttgaca 5354785  T
Q  118 ataataattgaatcctgataacga 141  Q
    ||||||||||||||||||||||||    
T  5354784 ataataattgaatcctgataacga 5354761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 5393528 - 5393406
Alignment:
Q  25 ggtattggcccctccaaatagttgcttgacatatccacataagtgaaggccatttggattttgacatacttcatttgatgacctttgttgacaataataa 124  Q
    |||||||||||||| || || |||||||||||||| |||||||| |||||  |||| |||||||||  |||||| ||||| ||||||||||||||| |||    
T  5393528 ggtattggcccctctaagtaattgcttgacatatcaacataagttaaggcactttgaattttgacaagcttcatctgatggcctttgttgacaatattaa 5393429  T
Q  125 ttgaatcctgataacgagtaaga 147  Q
    ||||| |||||||||||| ||||    
T  5393428 ttgaaacctgataacgagcaaga 5393406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 5379222 - 5379117
Alignment:
Q  25 ggtattggcccctccaaatagttgcttgacatatccacataagtgaaggccatttggattttgacatacttcatttgatgacctttgttgacaataataa 124  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| | ||||| |  |||||| |||||||||||||| ||||||||||    
T  5379222 ggtattggcccctctaaatagttgcttgacatatcaacataagtgaaggccttttgaactttgataagcttcatctgatgacctttgttaacaataataa 5379123  T
Q  125 ttgaat 130  Q
     |||||    
T  5379122 ctgaat 5379117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 443
Target Start/End: Complemental strand, 5412755 - 5412571
Alignment:
Q  259 aaagccttcaaagtcaaaggacgatagttatcgtagatttccaaaaacaaatggccaaattctggcccaagcatgccttcatcacgcatcattgccttcc 358  Q
    |||||||| ||| ||| |||| |  ||||||| | ||| || |||||||||||||| ||||||  || ||| | ||||||||||||||||||||||||||    
T  5412755 aaagccttgaaactcataggatggaagttatcatcgatgtcaaaaaacaaatggcctaattctttcctaagaacgccttcatcacgcatcattgccttcc 5412656  T
Q  359 aactgtttaacaatgttcctggtatcatgccactaaagttatttgaagctagatcgacaatatgaagcatctcccaatcaccagt 443  Q
    |||| ||||| |  |   |||||||  | ||  | |||||||| || |||||||| |||||||||||||||||||||||||||||    
T  5412655 aactatttaatagggcaactggtattgttccgttgaagttattggaggctagatcaacaatatgaagcatctcccaatcaccagt 5412571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 443
Target Start/End: Original strand, 5468071 - 5468213
Alignment:
Q  301 aaaaacaaatggccaaattctggcccaagcatgccttcatcacgcatcattgccttccaactgtttaacaatgttcctggtatcatgccactaaagttat 400  Q
    ||||||| ||||||||||||||| ||||| |  ||||||||||||||| ||||||||||||| ||||| |  |   | |||||  | || || |||||||    
T  5468071 aaaaacatatggccaaattctgggccaagaacaccttcatcacgcatcgttgccttccaactatttaatagagaaaccggtattgttccgctcaagttat 5468170  T
Q  401 ttgaagctagatcgacaatatgaagcatctcccaatcaccagt 443  Q
    | || |||||||| |||||||||||||||||||||||||||||    
T  5468171 tggaggctagatcaacaatatgaagcatctcccaatcaccagt 5468213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 443
Target Start/End: Complemental strand, 5393264 - 5393122
Alignment:
Q  301 aaaaacaaatggccaaattctggcccaagcatgccttcatcacgcatcattgccttccaactgtttaacaatgttcctggtatcatgccactaaagttat 400  Q
    |||||||||||||| ||||||| |||||| |   |||||||||||||||||||||||||||| ||||| |  |   |||||||  | ||  | |||||||    
T  5393264 aaaaacaaatggcctaattctgtcccaagaacatcttcatcacgcatcattgccttccaactatttaatagggagactggtattcttccgttcaagttat 5393165  T
Q  401 ttgaagctagatcgacaatatgaagcatctcccaatcaccagt 443  Q
    | || |||||||| |||||||||||||||| ||| ||||||||    
T  5393164 tggaggctagatcaacaatatgaagcatcttccagtcaccagt 5393122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 443
Target Start/End: Complemental strand, 5378946 - 5378804
Alignment:
Q  301 aaaaacaaatggccaaattctggcccaagcatgccttcatcacgcatcattgccttccaactgtttaacaatgttcctggtatcatgccactaaagttat 400  Q
    |||||||||| ||| |||||||||||||||| | |||| |||||||||||||| |||||||| ||||| | ||    || |||| |||| || |||||||    
T  5378946 aaaaacaaattgccgaattctggcccaagcacgtcttcgtcacgcatcattgctttccaactatttaagagtgcagatgatatcgtgccgctgaagttat 5378847  T
Q  401 ttgaagctagatcgacaatatgaagcatctcccaatcaccagt 443  Q
    |  | || ||||| |  ||||||||||||| ||||||||||||    
T  5378846 tgcatgccagatcaatgatatgaagcatcttccaatcaccagt 5378804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 443
Target Start/End: Original strand, 5423760 - 5423922
Alignment:
Q  281 gatagttatcgtagatttccaaaaacaaatggccaaattctggcccaagcatgccttcatcacgcatcattgccttccaactgtttaacaatgttcctgg 380  Q
    |||||||||| || | ||| |||||||||  ||| |||||||| ||||||| | |||| |||||||||||||| | |||||| ||||| | ||    ||     
T  5423760 gatagttatcataaacttcaaaaaacaaactgccgaattctggtccaagcacgtcttcgtcacgcatcattgcttgccaactatttaagagtgcagatga 5423859  T
Q  381 tatcatgccactaaagttatttgaagctagatcgacaatatgaagcatctcccaatcaccagt 443  Q
    |||||||||||| ||||||||    |||||||| || ||||||||||||| ||||| ||||||    
T  5423860 tatcatgccactgaagttattgcgtgctagatcaacgatatgaagcatcttccaataaccagt 5423922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 5346460 - 5346527
Alignment:
Q  301 aaaaacaaatggccaaattctggcccaagcatgccttcatcacgcatcattgccttccaactgtttaa 368  Q
    |||||||||| ||| |||||||| ||||||| | |||| |||||||||||||| |||||||| |||||    
T  5346460 aaaaacaaattgccgaattctggaccaagcacgtcttcgtcacgcatcattgctttccaactatttaa 5346527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 5354601 - 5354534
Alignment:
Q  301 aaaaacaaatggccaaattctggcccaagcatgccttcatcacgcatcattgccttccaactgtttaa 368  Q
    |||||||||||||| |||||||||||||||  | | ||||| ||||||||||| |||||||| |||||    
T  5354601 aaaaacaaatggccgaattctggcccaagctcgtcctcatcgcgcatcattgctttccaactatttaa 5354534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 5401489 - 5401431
Alignment:
Q  301 aaaaacaaatggccaaattctggcccaagcatgccttcatcacgcatcattgccttcca 359  Q
    ||||||||||  || |||||||||||||||| | ||||||||||||||||||| |||||    
T  5401489 aaaaacaaatttccgaattctggcccaagcacgtcttcatcacgcatcattgctttcca 5401431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 20329406 - 20329282
Alignment:
Q  17 actcatcaggtattggcccctccaaatagttgcttgacatatccacataagtgaaggccatttggattttgacatacttcatttgatgacctttgttgac 116  Q
    |||||||||||||| | ||||| || || |||||||||||||||||||||||||| ||| |||| | |||||||  |||||| |||||||||||||||||    
T  20329406 actcatcaggtatttgtccctctaagtaattgcttgacatatccacataagtgaaagccgtttgaactttgacaagcttcatctgatgacctttgttgac 20329307  T
Q  117 aataataattgaatcctgataacga 141  Q
    |||||||||||| ||||||||||||    
T  20329306 aataataattgactcctgataacga 20329282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 443
Target Start/End: Complemental strand, 20329142 - 20328980
Alignment:
Q  281 gatagttatcgtagatttccaaaaacaaatggccaaattctggcccaagcatgccttcatcacgcatcattgccttccaactgtttaacaatgttcctgg 380  Q
    |||||||||| || | ||| |||||||||  ||| |||||||| ||||||| | |||| |||||||||||||| | |||||| ||||| | ||    ||     
T  20329142 gatagttatcataaacttcaaaaaacaaactgccgaattctggtccaagcacgtcttcgtcacgcatcattgcttgccaactatttaagagtgcagatga 20329043  T
Q  381 tatcatgccactaaagttatttgaagctagatcgacaatatgaagcatctcccaatcaccagt 443  Q
    |||||||||||| ||||||||  | |||||||| || ||||||||||||| ||||| ||||||    
T  20329042 tatcatgccactgaagttattgcatgctagatcaacgatatgaagcatcttccaataaccagt 20328980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 25789250 - 25789205
Alignment:
Q  394 aagttatttgaagctagatcgacaatatgaagcatctcccaatcac 439  Q
    |||||||| ||||||||||| |||||||||||||| | ||||||||    
T  25789250 aagttattggaagctagatcaacaatatgaagcattttccaatcac 25789205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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