View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_38 (Length: 422)
Name: NF21553_high_38
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 26090170 - 26090579
Alignment:
| Q |
1 |
gttggatatataaagataggagattcttttacctgatttcttaaagttttaggtggagatgtgatatctaagtcttaacatcctaaacgtttagtccatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| || ||| ||||||||||||| |||||| |||||||||||||| |
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| T |
26090170 |
gttggatatataaagataggagattcttttacctgatcccttgaaattttaggtggaaatatgacatctaagtcttaatatcctagacgtttagtccatt |
26090269 |
T |
|
| Q |
101 |
gtc-gtcccgtactctcaacaaacatgacaccattaattgatgggccaaacaatttt-taattatttaaaaagtatacaagctgcaattatacatatttt |
198 |
Q |
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||| ||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26090270 |
gtcagtcccgttc-ctcaacaaacatgacaccattaattgattggccaaacaattttttaattatttaaaaagtatacaagttgcaattatacatatttt |
26090368 |
T |
|
| Q |
199 |
caactgttatggaaatgcagagggggacttcacaactattga---------gnnnnnnnnngaaggaatcacaactattgagttgattctattagaatag |
289 |
Q |
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| T |
26090369 |
caactgttatggaaattcagtgggggacttcacaactattgattttttttttttttttttttaaggaatcacaactattgagttgattcta-tagaatag |
26090467 |
T |
|
| Q |
290 |
tcaactttacgactatttcagctagatcatatcgaactctatggttcataaatcctagtactacgggaattttaaaatcatttgagtgacattataataa |
389 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26090468 |
tcaactttacgactatttcagctag---atatcgaactctatggttcataaatcctagtattacgggaattttaaaatcatttgagtgacattataataa |
26090564 |
T |
|
| Q |
390 |
aactaacagggtaag |
404 |
Q |
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||||||||||||||| |
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| T |
26090565 |
aactaacagggtaag |
26090579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 26080464 - 26080575
Alignment:
| Q |
114 |
ctcaacaaacatgacaccattaattgatgggccaaacaatttt-taattatttaaaaagtatacaagctgcaattatacatattttcaactgttatggaa |
212 |
Q |
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| T |
26080464 |
ctcaacaaacatgacaccattaattgattggccaaacaattttttaattattaaaaaaatatacaagctgcaattatacatattttcaactgttatggaa |
26080563 |
T |
|
| Q |
213 |
atgcagaggggg |
224 |
Q |
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|| ||| ||||| |
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| T |
26080564 |
attcagtggggg |
26080575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 402
Target Start/End: Original strand, 26080665 - 26080728
Alignment:
| Q |
339 |
aaatcctagtactacgggaattttaaaatcatttgagtgacattataataaaactaacagggta |
402 |
Q |
| |
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| T |
26080665 |
aaatcctagtattataggaattttaaaatcatttgagtgacactataattaaactaacagggta |
26080728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 26080577 - 26080643
Alignment:
| Q |
278 |
ctattagaatagtcaactttacgactatttcagctagatcatatcgaactctatggttcataaatcctagta |
349 |
Q |
| |
|
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| T |
26080577 |
ctattagaatagtcaactttacgactatttcagctag---atatcgaactc--tgtttcataaatcctagta |
26080643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 26056936 - 26056997
Alignment:
| Q |
319 |
tatcgaactctatggttcataaatcctagtactacgggaattttaaaatcatttgagtgaca |
380 |
Q |
| |
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| T |
26056936 |
tatcgaattctatggttcattaaacctagtattatgggaattttaaaatcagttgagtgaca |
26056997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 397
Target Start/End: Original strand, 26113586 - 26113663
Alignment:
| Q |
319 |
tatcgaactctatggttcataaatcctagtactacgggaattttaaaatcatttgagtgacattataataaaactaaca |
397 |
Q |
| |
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||||||| |||||||||||| || ||||||| || |||||||||||||||| | |||||||| || || |||||||||| |
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| T |
26113586 |
tatcgaattctatggttcattaaacctagtattatgggaattttaaaatcagtcgagtgacacta-aaaaaaactaaca |
26113663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 26056853 - 26056895
Alignment:
| Q |
263 |
actattgagttgattctattagaatagtcaactttacgactatttc |
308 |
Q |
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| T |
26056853 |
actattgagttgattctattagaatagt---ctttacgactatttc |
26056895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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