View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_41 (Length: 392)
Name: NF21553_high_41
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 392
Target Start/End: Original strand, 37911032 - 37911410
Alignment:
| Q |
14 |
atcagaatcttggaaataaaacaaaagttaaatcaataattttaactagagaacaagcttgccttggtcttctccgtccttgccttggtcatccccatcc |
113 |
Q |
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| T |
37911032 |
atcagaatcttggaaataaaacaaaagttaaatcaataattttaactagagaacaagcttgccttggtcgtctccgtccttgccttggtcatccccatcc |
37911131 |
T |
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| Q |
114 |
ttgccttggtcatctccatcaccaatgtgataaattgttttgcttgttaataattgtaacactcgctctgctttcgaatggaaccttgatgagtatcctt |
213 |
Q |
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| T |
37911132 |
ttgccttggtcatctccatcaccaatgtgataaattgttttgcttgttaataattgtaacactcgctctgctttcgaatggaaccttgatgagtatcctt |
37911231 |
T |
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| Q |
214 |
tcataatattataaagcaataattcaacaccagactctcggaatggagatggcttcttcgctacctcagtgatgactctttcaattcctgtccaaccaaa |
313 |
Q |
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| T |
37911232 |
tcataatattataaagcaataattcaacaccagactctcggaatggagatggcttcttcgctacctcagtgatgactctttcaattcctgtccaaccaaa |
37911331 |
T |
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| Q |
314 |
caatattacatgctttatagccccctcaaactaataaaatcgttaaaaccaaagagaaaagaacagaattaatgctaaa |
392 |
Q |
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| T |
37911332 |
caatattacatgctttatagccccctcaaactaataaaatcgttaaaaccaaagagaaaagaacagaattaatgctaaa |
37911410 |
T |
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