View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_42 (Length: 392)
Name: NF21553_high_42
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 28887010 - 28887355
Alignment:
| Q |
19 |
ggttatgctggtgttgggctaaaccctgcaagatgcttaggcgcggcgttgattcatggaggctcgttatggaatggtcattgggttttttgggttggac |
118 |
Q |
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| T |
28887010 |
ggttatgctggtgttgggctaaacccggcaagatgcttaggcgcggcgttgattcatggaggctcgttatggaatggtcattgggttttttgggttggac |
28887109 |
T |
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| Q |
119 |
ctatcttggcatgtttaatctattatagtatctctatcaacctaccaaaggagggtttggtttgggtggatggagaatatgatgtcttaaagttggctct |
218 |
Q |
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| T |
28887110 |
ctatcttggcatgtttaatctattatagtatctctatcaacctaccaaaggagggtttggtttgggtggatggagaatatgatatcttaaagttggctct |
28887209 |
T |
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| Q |
219 |
tggttctagtgggactattcataatggtgatgttccacatgatatcacaatagaaggaagtggagctgactttcaagaaggtcatgtatgaaaagagatg |
318 |
Q |
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| T |
28887210 |
tggttcttgcgcaactattcataatggtgatgtttcagatgatatcacaatagaaggaagtggagctggctttcaagaaggtcatgtatgaaaagagatg |
28887309 |
T |
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| Q |
319 |
ataaactttgtgacttcgttgtcactcacatactagtaatagttgg |
364 |
Q |
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| T |
28887310 |
ataaactttgtgacttcgttgtcactcacatactaataatagttgg |
28887355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 28882005 - 28882347
Alignment:
| Q |
19 |
ggttatgctggtgttgggctaaaccctgcaagatgcttaggcgcggcgttgattcatggaggctcgttatggaatggtcattgggttttttgggttggac |
118 |
Q |
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| T |
28882005 |
ggttacgctggcgttggtcttaacccagcaagatgcttaggcgcggcgttgcttcatggaggctcattatggaatggacattggcttttttgggttggac |
28882104 |
T |
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| Q |
119 |
ctatcttggcatgtttaatctattatagtatctctatcaacctaccaaaggagggtttggtttgggtggatggagaatatgatgtcttaaagttggctct |
218 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||| || || | || ||||||| |||| |||||||| |||||||||| || |||| |
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| T |
28882105 |
ctatcttggcatgtttactctattatagtgtctctatcaacctacctaaagaagtttcagtttgggatgatgaagaatatgttgtcttaaagctgcctct |
28882204 |
T |
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| Q |
219 |
tggttctagtgggactattcataatggtgatgttccacatgatatcacaatagaaggaagtggagctgactttcaagaaggtcatgtatgaaaagagatg |
318 |
Q |
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| T |
28882205 |
tggttcttgtaggactattcctaatggtgacattttaaatgatatcacaatagaaggaggtgcacaaggctatc---aagtccatgtatgaaaagtgatg |
28882301 |
T |
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| Q |
319 |
ataaactttgtgacttcgttgtcactcacatactagtaatagttgg |
364 |
Q |
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| T |
28882302 |
ataaactttgtgactttgttgtcactcacatactagtaatagttgg |
28882347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 28889095 - 28889169
Alignment:
| Q |
160 |
ctaccaaaggagggtttggtttgggtggatggagaatatgatgtcttaaagttggctcttggttctagtgggact |
234 |
Q |
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||||| |||||||||||||||||||| |||||||||||| || |||||| ||||||| | |||| | |||||||| |
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| T |
28889095 |
ctacctaaggagggtttggtttgggttgatggagaatatcatatcttaaggttggctatgggtttttgtgggact |
28889169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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