View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_high_43 (Length: 389)
Name: NF21553_high_43
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_43 |
 | |
|
| [»] scaffold0158 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 52470725 - 52470370
Alignment:
| Q |
17 |
gatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttacc |
116 |
Q |
| |
|
||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52470725 |
gatacccaaataagttaagggattcgaccgccactgctgacaaccaaaaacaaacgtggcattactagccatcaaccaccaataagaatggaattttacc |
52470626 |
T |
|
| Q |
117 |
ttttcaacaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatcaattgga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52470625 |
ttttcaacaagatccattatggaagagtaaacattattaaagattctattattacgctctttccataatagccaaacacaaaggagccaaatcaattgga |
52470526 |
T |
|
| Q |
217 |
ggaatgatcgacgaatcctcgaaccacctaggtaattaaaaaattgttagaaatgagcacctagactttggtggttgacgcttgaaacacctatccataa |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52470525 |
ggaatgatcaacgaatcctcgaaccacctaggtaattaaaaaattgttagaaatgagcacctagactttggtggttgacgcttgaaacacctatccataa |
52470426 |
T |
|
| Q |
317 |
ctaaacctgctgccaaagagatccgaaaatgtcacagtgaagaaacaaatgttgag |
372 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52470425 |
ctaaacctgctgccaaagtgatccgaaaatgtcacaatgaagaaacaaatgttgag |
52470370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 22093786 - 22093529
Alignment:
| Q |
17 |
gatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttacc |
116 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||| ||||||| | ||||||| ||| ||||| ||||| |||||||||||||| |||| ||||||||| |
|
|
| T |
22093786 |
gatacccaaacaagctaagggatccgaccgccactgttgacaaccataaacaaaagtgacattattagccctcaaccaccaataagaatgaaattttacc |
22093687 |
T |
|
| Q |
117 |
ttttcaacaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatcaattgga |
216 |
Q |
| |
|
||||| ||||||||| | ||||||| |||| |||||||| |||||||| ||| | |||||||||| ||| ||||||||||||||||||||||| |||| |
|
|
| T |
22093686 |
ttttccacaagatccgtaatggaagtgtaagtattattaaaaattctattgttatgttctttccatattagccaaacacaaaggagccaaatcaaatgga |
22093587 |
T |
|
| Q |
217 |
ggaatgatcgacgaatcctcgaaccacctaggtaattaaaaaattgttagaaatgagc |
274 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
22093586 |
ggaatgatcgacgagtcttcgaaccacctgtgtaattagtaaattggaagaaatgagc |
22093529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 372
Target Start/End: Original strand, 34179541 - 34179890
Alignment:
| Q |
23 |
caaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttaccttttca |
122 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||| ||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
34179541 |
caaacaagctaagggatttaaccgccactactgacaaccaaaaacaaacgtgacattattagccctcaaccaccaataagaatggaattttaccctttca |
34179640 |
T |
|
| Q |
123 |
acaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatcaattggaggaatg |
222 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||| ||| |||||||| |||||||||| | ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34179641 |
acaagatctgttatggaagtgtaaacatttttaaaaattttattattatgctctttccaaattagtcaaacacaaaggagccaaatcaattcgaggaata |
34179740 |
T |
|
| Q |
223 |
atcgacgaatcctcgaaccacctaggtaattaaaaaattgttagaaatgagcacctagactttggtggttgacgcttgaaacacctatccataactaaac |
322 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||| ||| | ||||||||||| ||||||| ||| |
|
|
| T |
34179741 |
atcgacgagtcctcgaaccacctaggtaattagaaaattgtaagaaatgagaacctacactttggtggtcgactcctgaaacacctagccataaccgaac |
34179840 |
T |
|
| Q |
323 |
ctgctgccaaagagatccgaaaatgtcacagtgaagaaacaaatgttgag |
372 |
Q |
| |
|
||||||||||| |||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
34179841 |
ctgctgccaaatagatccgaaattgtcgcaatgaagaaacaaatgttgag |
34179890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 39 - 243
Target Start/End: Complemental strand, 41325506 - 41325302
Alignment:
| Q |
39 |
tccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttaccttttcaacaagatccattatgg |
138 |
Q |
| |
|
||||||| ||||||| |||||| | | || || |||| |||| || || ||||||||||||| |||| ||||||||||||| ||||| ||| | ||| |
|
|
| T |
41325506 |
tccgaccaccactgccgacaaccatatactaaagtggtattattaaccctcaaccaccaatataaatgaaattttacctttttcacaagctccgtaatga |
41325407 |
T |
|
| Q |
139 |
aagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatcaattggaggaatgatcgacgaatcctcga |
238 |
Q |
| |
|
||| |||| |||||||| |||||||| ||||| ||||| |||| ||| |||| ||||||||| ||||||||||||||||||||||||||| ||||| | |
|
|
| T |
41325406 |
aagtgtaagtattattaaatattctattgttacgttcttttcatattagccaaatacaaaggagtcaaatcaattggaggaatgatcgacgagtcctcaa |
41325307 |
T |
|
| Q |
239 |
accac |
243 |
Q |
| |
|
||||| |
|
|
| T |
41325306 |
accac |
41325302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 32271069 - 32271155
Alignment:
| Q |
150 |
ttattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatcaattggaggaatgatcgacgaatcctc |
236 |
Q |
| |
|
||||||| |||||||||||||| |||||||| | || ||||||||||||||||||| || ||||| || ||||||||| ||||| |
|
|
| T |
32271069 |
ttattaaatattctattattacgttctttccacactaaacaaacacaaaggagccaaagtaactggagaaacgatcgacgagtcctc |
32271155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 32617578 - 32617655
Alignment:
| Q |
41 |
cgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttacctt |
118 |
Q |
| |
|
||||| |||||||||||||| ||||||||| | ||||||| ||||| ||||||||| || |||| ||||| ||||| |
|
|
| T |
32617578 |
cgaccaccactgctgacaaccaaaaacaaaagcggcattattagcctgcaaccaccagtaggaatgaaatttaacctt |
32617655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 372
Target Start/End: Original strand, 26658585 - 26658918
Alignment:
| Q |
39 |
tccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttaccttttcaacaagatccattatgg |
138 |
Q |
| |
|
||||||| |||||||||||||| | | || || ||| ||||| |||| |||||||||| || |||| |||||||||||||| | ||| ||| | |||| |
|
|
| T |
26658585 |
tccgaccaccactgctgacaaccatatactaaagtgacattattagctctcaaccaccagtataaatgaaattttaccttttccataagctccgtaatgg |
26658684 |
T |
|
| Q |
139 |
aagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatcaattggaggaatgatcgacgaatcctcga |
238 |
Q |
| |
|
||| ||| |||||||| | |||||||||||| || ||||| | || ||||||||||| ||||||| || ||||| |||||||||| | |||| | |
|
|
| T |
26658685 |
aagtgtatgaattattaaatagtctattattacgttcattccacactaaccaaacacaaagaagccaaagtaactggagaaatgatcgacaagccctcaa |
26658784 |
T |
|
| Q |
239 |
accacctaggtaattaaaaaattgttagaaatgagcacctagactttggtggttgacgcttgaaacacctatccataactaaacctgctgccaaagagat |
338 |
Q |
| |
|
||||||| |||||||| |||||| | || ||||||| |||||||| || | || | ||||||||| | ||| |||| ||| ||||| ||||| || |
|
|
| T |
26658785 |
gccacctaagtaattaataaattggaaaaagtgagcacaaagactttgatgatcaacacctgaaacaccaagccacaactgaacttgctgtcaaagggag |
26658884 |
T |
|
| Q |
339 |
ccgaaaatgtcacagtgaagaaacaaatgttgag |
372 |
Q |
| |
|
|| ||||| ||||| |||||||||| |||||||| |
|
|
| T |
26658885 |
ccaaaaatatcacaatgaagaaacagatgttgag |
26658918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 33694317 - 33694387
Alignment:
| Q |
135 |
atggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagcca |
205 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||||| |||||||||| ||||| |||||||| ||||| |
|
|
| T |
33694317 |
atggaagaatgaacattattaaaaattctattattacgttctttccatatgagtcacacacaaagaagcca |
33694387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 30906225 - 30906301
Alignment:
| Q |
42 |
gaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttacctt |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||| | ||||||| |||| |||||||||||| | |||||||| ||||| |
|
|
| T |
30906225 |
gaccgccactgctgacaaccaaaaacaaatgcggcattattagcatgcaaccaccaataggagtggaatttaacctt |
30906301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 7725901 - 7726016
Alignment:
| Q |
17 |
gatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttacc |
116 |
Q |
| |
|
||||| |||||||||||| || ||||||| ||| |||||||||| |||||| || |||||| ||||| ||||||||||||| |||| ||||| ||| |
|
|
| T |
7725901 |
gatacccaaacaagttaacgggtccgaccaccattgctgacaaccaaaaaccaaatcagcattattagccttcaaccaccaatatgaatgaaatttaacc |
7726000 |
T |
|
| Q |
117 |
ttttcaacaagatcca |
132 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
7726001 |
ttttcaataagctcca |
7726016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 39474253 - 39474220
Alignment:
| Q |
335 |
agatccgaaaatgtcacagtgaagaaacaaatgt |
368 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
39474253 |
agatccgaaaatgtcacaatgaagaaacaaatgt |
39474220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 23055492 - 23055436
Alignment:
| Q |
41 |
cgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccacca |
97 |
Q |
| |
|
||||| |||||||||||| | ||||||||| | ||||||| ||||| |||||||||| |
|
|
| T |
23055492 |
cgaccaccactgctgacacccaaaaacaaaagaggcattattagccctcaaccacca |
23055436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 26442678 - 26442525
Alignment:
| Q |
43 |
accgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttaccttttcaacaagatccattatggaaga |
142 |
Q |
| |
|
|||||||||||| ||| | | ||||||| | ||| ||| | ||| | ||||||||||| |||| ||||| |||||||| ||| ||||| |||||||| |
|
|
| T |
26442678 |
accgccactgctcacagccataaacaaaagaggcgttatttgcctttaaccaccaataggaatgaaatttaaccttttctgtaagctccataatggaaga |
26442579 |
T |
|
| Q |
143 |
gtaaacattattaacgattctattattacgctctttccataatagtcaaacaca |
196 |
Q |
| |
|
| ||||||||||| ||||||||||| || |||||||| | ||||||||||| |
|
|
| T |
26442578 |
atgaacattattaaaaattctattattgcgttctttccaaatgagtcaaacaca |
26442525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 50416380 - 50416300
Alignment:
| Q |
41 |
cgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttaccttttc |
121 |
Q |
| |
|
|||||||||||||||||||| | | ||||| | ||||||| |||| ||||||||||||| | ||||| || |||||||| |
|
|
| T |
50416380 |
cgaccgccactgctgacaaccatacacaaatgcggcattattagcacgcaaccaccaataagagtggaacttaaccttttc |
50416300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 9509446 - 9509581
Alignment:
| Q |
111 |
tttaccttttcaacaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatca |
210 |
Q |
| |
|
||||||||||| | |||| | | ||||||| ||||||||||||| ||| |||||||||| |||||||||| || ||||||||||| ||||| | | |
|
|
| T |
9509446 |
tttaccttttccataagactcgtaatggaagtataaacattattaaaaattatattattacgttctttccatatgagccaaacacaaagaagccacagta |
9509545 |
T |
|
| Q |
211 |
attggaggaatgatcgacgaatcctcgaaccaccta |
246 |
Q |
| |
|
| | |||||||||| |||| ||||||| ||||||| |
|
|
| T |
9509546 |
acagaaggaatgatctacgactcctcgagccaccta |
9509581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 9517421 - 9517556
Alignment:
| Q |
111 |
tttaccttttcaacaagatccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagccaaatca |
210 |
Q |
| |
|
||||||||||| | |||| | | ||||||| ||||||||||||| ||| |||||||||| |||||||||| || ||||||||||| ||||| | | |
|
|
| T |
9517421 |
tttaccttttccataagactcgtaatggaagtataaacattattaaaaattatattattacgttctttccatatgagccaaacacaaagaagccacagta |
9517520 |
T |
|
| Q |
211 |
attggaggaatgatcgacgaatcctcgaaccaccta |
246 |
Q |
| |
|
| | |||||||||| |||| ||||||| ||||||| |
|
|
| T |
9517521 |
acagaaggaatgatctacgactcctcgagccaccta |
9517556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 17619751 - 17619827
Alignment:
| Q |
129 |
tccattatggaagagtaaacattattaacgattctattattacgctctttccataatagtcaaacacaaaggagcca |
205 |
Q |
| |
|
||||| |||||||| | ||||||||||| |||||||||||||| |||||||||| || || |||||||| ||||| |
|
|
| T |
17619751 |
tccataatggaagaatgaacattattaaaaattctattattacgttctttccatatgagccacacacaaagaagcca |
17619827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 31765327 - 31765411
Alignment:
| Q |
42 |
gaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttaccttttcaacaa |
126 |
Q |
| |
|
||||||||||||||||||| ||||| ||| | ||||||| |||| |||||||||||| | |||||||| ||||| ||||||| |
|
|
| T |
31765327 |
gaccgccactgctgacaaccaaaaataaaagcggcattattagcacgcaaccaccaataggagtggaatttaaccttctcaacaa |
31765411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 18893363 - 18893431
Alignment:
| Q |
299 |
tgaaacacctatccataactaaacctgctgccaaagagatccgaaaatgtcacagtgaagaaacaaatg |
367 |
Q |
| |
|
||||||||| ||||||||| || |||||||| | ||| ||||||||||||||| |||||||||||| |
|
|
| T |
18893363 |
tgaaacaccaatccataacctgacatgctgccacaaagacccgaaaatgtcacagctaagaaacaaatg |
18893431 |
T |
|
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Target: scaffold0158 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 26963 - 27078
Alignment:
| Q |
17 |
gatactcaaacaagttaagggatccgaccgccactgctgacaactaaaaacaaacgtggcattactagccatcaaccaccaataacaatggaattttacc |
116 |
Q |
| |
|
||||| |||||||||||| || | ||||| ||||| |||| ||| | ||||||| | ||||||| ||||| |||||||||| || |||| || || ||| |
|
|
| T |
26963 |
gatacccaaacaagttaacgggtacgaccaccactcctgagaaccataaacaaaagcggcattattagccttcaaccaccagtatgaatgaaacttaacc |
27062 |
T |
|
| Q |
117 |
ttttcaacaagatcca |
132 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
27063 |
ttttcaataagctcca |
27078 |
T |
|
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