View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_50 (Length: 348)
Name: NF21553_high_50
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 5982067 - 5982156
Alignment:
| Q |
97 |
acaaaaacatttctt-atatgttgatacatgtggagtatatcggaggaaatggagccgaatctatagaaagagaatattattacattgtt |
185 |
Q |
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| T |
5982067 |
acaaaaacatttctttatatgttgatacatgtggagtatgtcggaggaaatggagccggatctatagaaagagaatgttattacattgtt |
5982156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 207 - 314
Target Start/End: Original strand, 5982190 - 5982297
Alignment:
| Q |
207 |
atgtatgttccatttattccacttatggatttagataaaagacatgtggcaaataaacattcaagggctgtgannnnnnnnatattaaaaaataaacatt |
306 |
Q |
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| T |
5982190 |
atgtatgctctatttattccacttatgagtttagatgaaagacatgtggcaaataaacattcaagggttgtgattttgtttatattaaaaaataaatatt |
5982289 |
T |
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| Q |
307 |
atttaatt |
314 |
Q |
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| T |
5982290 |
atttaatt |
5982297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 5981998 - 5982046
Alignment:
| Q |
34 |
acatacggtagtcggacaatttttaattgtccaaataacatttcctgta |
82 |
Q |
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| T |
5981998 |
acatacggtagtcggacaatttttaattgtccaaataacatttcttgta |
5982046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 7388496 - 7388530
Alignment:
| Q |
245 |
aagacatgtggcaaataaacattcaagggctgtga |
279 |
Q |
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| T |
7388496 |
aagacatgtggcaaataaacattcaagggttgtga |
7388530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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