View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_high_52 (Length: 342)

Name: NF21553_high_52
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_high_52
NF21553_high_52
[»] chr2 (24 HSPs)
chr2 (8-328)||(9321666-9321986)
chr2 (81-297)||(10372588-10372804)
chr2 (74-296)||(9292638-9292857)
chr2 (8-184)||(9329418-9329598)
chr2 (27-273)||(9060271-9060517)
chr2 (27-232)||(8572675-8572879)
chr2 (29-232)||(9316793-9316999)
chr2 (74-247)||(10353901-10354074)
chr2 (74-191)||(10336623-10336740)
chr2 (74-186)||(10348620-10348732)
chr2 (74-183)||(12018134-12018243)
chr2 (74-187)||(7114865-7114978)
chr2 (74-191)||(9275335-9275452)
chr2 (74-191)||(9283394-9283511)
chr2 (74-191)||(12005385-12005502)
chr2 (107-232)||(14551091-14551215)
chr2 (85-184)||(9357935-9358034)
chr2 (74-183)||(12011813-12011922)
chr2 (74-183)||(7612716-7612825)
chr2 (104-183)||(9365415-9365494)
chr2 (77-136)||(8578748-8578807)
chr2 (74-179)||(11986745-11986850)
chr2 (272-324)||(9329287-9329339)
chr2 (74-174)||(17565334-17565434)
[»] chr3 (2 HSPs)
chr3 (74-247)||(37463278-37463451)
chr3 (74-148)||(39428733-39428807)
[»] scaffold0667 (1 HSPs)
scaffold0667 (74-201)||(5261-5388)
[»] chr4 (2 HSPs)
chr4 (74-247)||(26575635-26575808)
chr4 (107-191)||(561982-562066)
[»] chr8 (1 HSPs)
chr8 (74-205)||(41965942-41966073)
[»] chr1 (2 HSPs)
chr1 (89-216)||(29452586-29452713)
chr1 (89-232)||(29467060-29467203)
[»] chr5 (1 HSPs)
chr5 (74-182)||(36225571-36225679)


Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 9321986 - 9321666
Alignment:
Q  8 cacagaaccctagaacgaaccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321986 cacacaaccctagaacgaaccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttc 9321887  T
Q  108 tccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321886 tccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcat 9321787  T
Q  208 tcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccactcaaccatcctttcaccaccaacatc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9321786 tcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccactcaaccatcctttcaccaccaaaatc 9321687  T
Q  308 actcctgtcacacgtaataga 328  Q
    |||||||||||||||||||||    
T  9321686 actcctgtcacacgtaataga 9321666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 81 - 297
Target Start/End: Complemental strand, 10372804 - 10372588
Alignment:
Q  81 tctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaa 180  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||  |||||||||| ||| | |||||||||||||| ||| |    
T  10372804 tctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctcca 10372705  T
Q  181 aaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgat---gatcatgatgatttctctaaatccatgatgatt 277  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||   ||| |||||||||||||||||||   || ||||    
T  10372704 aaattccctcaatcgatccttaatccttcaacgcaaattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatc---gaggatt 10372608  T
Q  278 ccactcaaccatcctttcac 297  Q
    ||||||||||||||||||||    
T  10372607 ccactcaaccatcctttcac 10372588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 74 - 296
Target Start/End: Complemental strand, 9292857 - 9292638
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| |||||||| |||| |||||||||||||||  ||||||||||| ||| ||||||||||||||| |||||||||| |||  |||||  |||||||    
T  9292857 gaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttc 9292758  T
Q  174 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgat 273  Q
    | ||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||   |||    
T  9292757 acctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcgatgatgatgatgatttctccaagtc---gat 9292661  T
Q  274 gattccactcaaccatcctttca 296  Q
     ||||||||||||||||||||||    
T  9292660 tattccactcaaccatcctttca 9292638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 9329598 - 9329418
Alignment:
Q  8 cacagaaccctagaacgaaccttccttcc----aatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatca 103  Q
    |||| ||||||||||||||||||||||||    ||||||| ||||||||| || ||||||||||||   |||||||||||||||||||||||||||||||    
T  9329598 cacacaaccctagaacgaaccttccttccttccaatggcgggtgatgttcttctgccggaattgttaacggaaatcctctcccgcttaccggtaaaatca 9329499  T
Q  104 cttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaat 184  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| ||||||  |||||||| |||||||||    
T  9329498 cttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 273
Target Start/End: Original strand, 9060271 - 9060517
Alignment:
Q  27 ccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttc 126  Q
    |||||||||||||||||  |||||||| |||||||||| |  | |  |||||| ||||||||||||||||  |||||||||||| |||||||||||||||    
T  9060271 ccttccttccaatggcggctgatgttcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttc 9060370  T
Q  127 taaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaa---aattccctcagtcgatccttaatcattcaacacaaattcgat 223  Q
     ||||||||||||||| |||||||||| ||| ||||||  |||||| | ||||||   ||| |||||| |||||   ||||| ||| |||||||| ||||    
T  9060371 aaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgat 9060470  T
Q  224 ctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgat 273  Q
    ||||||||||||||| ||||||   ||||||||||||||||||| |||||    
T  9060471 ctctaccaactccaagtcgatg---atgatgatttctctaaatcaatgat 9060517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 8572675 - 8572879
Alignment:
Q  27 ccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttc 126  Q
    ||||||||||||||||| ||||||||| |||| ||||| |  |    |||||| |||||||| |||| ||||| |||||||||| |||||||||||||||    
T  8572675 ccttccttccaatggcgggtgatgttcttccgtcggaaatagtcactgaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaacttc 8572773  T
Q  127 taaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctc 226  Q
     |||||||||||||| ||||||||||| ||| |||||| ||||||||| |||||||||||||||| ||| ||||||||||||| || ||| | |||| ||    
T  8572774 aaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaactacgatatc 8572873  T
Q  227 taccaa 232  Q
    ||||||    
T  8572874 taccaa 8572879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 9316999 - 9316793
Alignment:
Q  29 ttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttcta 128  Q
    |||||||||||||||  ||| | || |||||||||| |  | |  |||||| |||||| |||||| |||||||||||||||| ||||||||||||||| |    
T  9316999 ttccttccaatggcggctgacggtcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaa 9316900  T
Q  129 aatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaa---aattccctcagtcgatccttaatcattcaacacaaattcgatct 225  Q
    |||||||||||||  |||| ||||| ||| |||||||||||||||| ||||||   |||||||||| ||||||||||||| ||||  |||||| ||| ||    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaact 9316800  T
Q  226 ctaccaa 232  Q
    |||||||    
T  9316799 ctaccaa 9316793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 74 - 247
Target Start/End: Complemental strand, 10354074 - 10353901
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||||| |||||||||||||||| ||||||||||  ||||||||||||||| |||||| |||||||| ||||||||||  || | |||||||||||||    
T  10354074 gaaatcctttcccgcttaccggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttc 10353975  T
Q  174 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 247  Q
    | |||| |||||||| || || |||||||||  ||| |  |||||||||| |||||||| |  |||||||||||    
T  10353974 acctcagaaattcccccaatcaatccttaattcttcgattcaaattcgatatctaccaaattaaaatcgatgat 10353901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 10336740 - 10336623
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| ||| | |||||||||||||    
T  10336740 gaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttc 10336641  T
Q  174 atctcaaaaattccctca 191  Q
    | ||  ||||||||||||    
T  10336640 accttcaaaattccctca 10336623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 10348732 - 10348620
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| | | | |||||||||||||    
T  10348732 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttc 10348633  T
Q  174 atctcaaaaattc 186  Q
    | || ||||||||    
T  10348632 acctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 12018134 - 12018243
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||    
T  12018134 gaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttc 12018233  T
Q  174 atctcaaaaa 183  Q
    | ||||||||    
T  12018234 aactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 7114865 - 7114978
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| |||| ||| |||| |||  ||||||||| | ||||||||||||||| ||||||||||||||| |||||||||| ||| | |||||||||||||    
T  7114865 gaaatcttctctcgcctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttc 7114964  T
Q  174 atctcaaaaattcc 187  Q
    |||| |||||||||    
T  7114965 atcttaaaaattcc 7114978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 9275452 - 9275335
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| ||||||| ||||| ||| |||||||||||  |||||||||||  || ||||||||||||||  | || ||||| ||| |||||||||||||||    
T  9275452 gaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttc 9275353  T
Q  174 atctcaaaaattccctca 191  Q
    ||||||||||||||||||    
T  9275352 atctcaaaaattccctca 9275335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 9283394 - 9283511
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| ||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  |||| |||| ||||| ||| | |||||||||||||    
T  9283394 gaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttc 9283493  T
Q  174 atctcaaaaattccctca 191  Q
    | ||||||| ||||||||    
T  9283494 acctcaaaagttccctca 9283511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 12005385 - 12005502
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| |||||||||||||   | |||||||||||| |||||| ||||||||  |||| |||||||||||||||||||| ||| |||||| ||||||||    
T  12005385 gaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaaccttc 12005484  T
Q  174 atctcaaaaattccctca 191  Q
    |||| |||||||| ||||    
T  12005485 atctaaaaaattctctca 12005502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 14551215 - 14551091
Alignment:
Q  107 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatca 206  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||||| ||| |||||||||| ||||| || ||||||||||||| | | |||||||||     
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatcc 14551117  T
Q  207 ttcaacacaaattcgatctctaccaa 232  Q
    ||| |||||| | | |||||||||||    
T  14551116 ttcgacacaagtccaatctctaccaa 14551091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 9358034 - 9357935
Alignment:
Q  85 ccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaat 184  Q
    ||||||||| ||||||||||||||||  ||  |||||||||| ||||||||||||||| |||||||||| ||| ||||||| |||||||| |||||||||    
T  9358034 ccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 12011813 - 12011922
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| ||||||||||||    | |||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||    
T  12011813 gaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttc 12011912  T
Q  174 atctcaaaaa 183  Q
    | ||||||||    
T  12011913 acctcaaaaa 12011922  T

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Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 7612825 - 7612716
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    ||||||||||| |||||||||||| || | || |||| ||||||||||| ||||||||| ||||||||| |||| ||||| ||| ||||||  |||||||    
T  7612825 gaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttc 7612726  T
Q  174 atctcaaaaa 183  Q
    | ||||||||    
T  7612725 acctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 9365494 - 9365415
Alignment:
Q  104 cttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaa 183  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||| |||  ||||| |||||| |||||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

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Target: chr2; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 8578748 - 8578807
Alignment:
Q  77 atcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcactt 136  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||    
T  8578748 atcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcactt 8578807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 11986745 - 11986850
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| ||||||||||||    | |||||||||||| |||||| ||||||||  |||| |||||||||||||| ||||| ||| |||||| ||| ||||    
T  11986745 gaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttc 11986844  T
Q  174 atctca 179  Q
    | ||||    
T  11986845 acctca 11986850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 9329339 - 9329287
Alignment:
Q  272 atgattccactcaaccatcctttcaccaccaacatcactcctgtcacacgtaa 324  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||| |||||    
T  9329339 atgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaa 9329287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 17565334 - 17565434
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    ||||||||||| |||||||| ||| |||| || |||| | |||||||||| || |||||||||||||   |||| ||||| ||  |||||| ||||||||    
T  17565334 gaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttc 17565433  T
Q  174 a 174  Q
    |    
T  17565434 a 17565434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 74 - 247
Target Start/End: Complemental strand, 37463451 - 37463278
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||||||||||| ||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||  |||||||||| ||| |||||||||||||||    
T  37463451 gaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttc 37463352  T
Q  174 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 247  Q
    ||||||||||| |||||| || |||| ||||||||| | |||| | |||| |||||||||||||||||||||||    
T  37463351 atctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatctaccaactccaaatcgatgat 37463278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 39428807 - 39428733
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatc 148  Q
    |||||||||||||||||||||||  |||| || |||||||||||||||||||| |||| | |||||||| |||||    
T  39428807 gaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc 39428733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 5388 - 5261
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  5388 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttc 5289  T
Q  174 atctcaaaaattccctcagtcgatcctt 201  Q
    | | |||||||||||||| | |||||||    
T  5288 accgcaaaaattccctcaatagatcctt 5261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 74 - 247
Target Start/End: Complemental strand, 26575808 - 26575635
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| ||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||  || | |||||||||||||    
T  26575808 gaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttc 26575709  T
Q  174 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 247  Q
    | |||| |||||||| || ||||||||||||| ||| |  |||||||||| ||||||||||  ||||| |||||    
T  26575708 acctcagaaattcccccaatcgatccttaatccttcgattcaaattcgatatctaccaacttgaaatcaatgat 26575635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 562066 - 561982
Alignment:
Q  107 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctca 191  Q
    |||| |||||||| || ||| ||||  |||||||||||||||||||| ||| ||||||  |||||||| |||||||| |||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctca 561982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 41965942 - 41966073
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||| ||||||  ||||||||||||||| |||||| |||||||||||| || |||||||||  |||| |||||||||| ||| |||||||||||||||    
T  41965942 gaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttc 41966041  T
Q  174 atctcaaaaattccctcagtcgatccttaatc 205  Q
    | |||| ||| ||||||| |||||||||||||    
T  41966042 acctcagaaaatccctcaatcgatccttaatc 41966073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 29452586 - 29452713
Alignment:
Q  89 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 188  Q
    ||||||||| |||| || |||| |||||| ||||| || ||||||||| ||||| |||||||||| ||| |||||||||| ||||| ||| |||||||||    
T  29452586 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 29452685  T
Q  189 tcagtcgatccttaatcattcaacacaa 216  Q
    ||| ||| ||||||||| ||| ||||||    
T  29452686 tcaatcgttccttaatccttcgacacaa 29452713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 29467060 - 29467203
Alignment:
Q  89 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 188  Q
    ||||||||| |||| || |||| |||||| ||||| || ||||||||| ||||| |||||||||| ||| |||||||||| ||||| |||  ||||||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccc 29467159  T
Q  189 tcagtcgatccttaatcattcaacacaaattcgatctctaccaa 232  Q
    ||| ||| | ||||||| ||| |||||| | |||| ||||||||    
T  29467160 tcaatcgtttcttaatccttcgacacaactccgatttctaccaa 29467203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 36225679 - 36225571
Alignment:
Q  74 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 173  Q
    |||||||||||||||||||  ||  |||| || |||| ||||||||||||||| ||||||||||||||  |||||||||||||| ||||||  || ||||    
T  36225679 gaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttc 36225580  T
Q  174 atctcaaaa 182  Q
    | |||||||    
T  36225579 acctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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