View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_53 (Length: 341)
Name: NF21553_high_53
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 162 - 324
Target Start/End: Complemental strand, 6077967 - 6077805
Alignment:
| Q |
162 |
aagaaattggttccaaatcaacggaaacctcaacaatgtttcgtttcaaatcattggaatcctacaaaatatctgtttttaaatcattgaaagtctcaac |
261 |
Q |
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| T |
6077967 |
aagaaattggttccaaatcaacggaaacctcaacaatgtttcgttttaaatcattggaatcctacaaaatatctgttttcaaatcattgaaagtctcaac |
6077868 |
T |
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| Q |
262 |
aatgtctagtttcaaatcaacaaaagcttcaccattgtttctctttggatcaataggatgatc |
324 |
Q |
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| T |
6077867 |
aatgtctggtttcaaatcaacaaaagcttcaccattgtttctctttggatcaataggatgatc |
6077805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 6078032 - 6077995
Alignment:
| Q |
162 |
aagaaattggttccaaatcaacggaaacctcaacaatg |
199 |
Q |
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| T |
6078032 |
aagatattggttccaaatcaacggaaacctcaacaatg |
6077995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 21093309 - 21093236
Alignment:
| Q |
139 |
cttaacaatattctctttagaataagaaattggttccaaatcaacggaaacctcaacaatgtttcgtttcaaat |
212 |
Q |
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| T |
21093309 |
cttaacaatgttctcttgagattaaacatttggtttcaaatcaatggaaatctcaacaatgtttggtttcaaat |
21093236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 21093272 - 21093200
Alignment:
| Q |
242 |
aaatcattgaaagtctcaacaatgtctagtttcaaatcaacaaaagcttcaccattgtttctctttggatcaa |
314 |
Q |
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| T |
21093272 |
aaatcaatggaaatctcaacaatgtttggtttcaaattaacagaagcttcaacattgtttgactttggatcaa |
21093200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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