View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_61 (Length: 328)
Name: NF21553_high_61
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_61 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 42523748 - 42524058
Alignment:
| Q |
18 |
atatgtagacataaaactatagcaacggaactctccatccagagcgtagaatttaagaatatccaattttactctttcctnnnnnnncaagaacaaaatc |
117 |
Q |
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| T |
42523748 |
atatgtagacataaaactatagcaacggaactctccatccacagcgtagaatttaagaatatccaattttactctttcctaaaaaaacaagaacaaaatc |
42523847 |
T |
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| Q |
118 |
agttgaatttaaatgcaattttaagagtattacataaaacataacacaattgaaatgaattgaccttaaccaattgttgatcgggtttgactcctcgagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42523848 |
agttgaatttaaatgcaattttaagagtattacataaaacataacacaattgaaatgaattgaccttaaccaattgttgatcgggtttgactcctcgagt |
42523947 |
T |
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| Q |
218 |
gactccaacacccacagcctgatcagtaacagattgcacaaaccttcttacaacaggaagacttacatcagcttctaaaagagctctcctaatatctcgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42523948 |
gactccaacacccacagcctgatcagtaacagattgcacaaaccttcttacaacaggaagacttacatcagcttctaaaagagctctcctaatatctcgc |
42524047 |
T |
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| Q |
318 |
ataggctccac |
328 |
Q |
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||||||||||| |
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| T |
42524048 |
ataggctccac |
42524058 |
T |
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