View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_67 (Length: 317)
Name: NF21553_high_67
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_67 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 28101333 - 28101036
Alignment:
| Q |
20 |
cacagactcgaataatacaaactgttgcaggagacggtagaaacaaactgcaggccaaaaaaccagattactctagagcaaaacagaaacacatcatagg |
119 |
Q |
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| T |
28101333 |
cacagactcgaataatacaaacagttgcaggagacggcagaaacaaactgcaggcgaaccaaccagattactctagagcaaaacagaaacacaacatggg |
28101234 |
T |
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| Q |
120 |
ctagaagaacaaccaagcagcagcctccgtacctcacaattttgaaacatcgctaaaagccacatagaactactaccgagaatcaattaaggaattagac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28101233 |
ctagaagaacaaccaagcagcagcctccgtacctcacaattttgaaacatcgctaaaaaccacatagaactactaccgagaagcaattaaggaattagac |
28101134 |
T |
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| Q |
220 |
catgacagaaacaaactcaacaaatcgcagcatcccaaagaactcaacccctcgccacattgaaaagtgagataaattagttgaccatacacctttga |
317 |
Q |
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| T |
28101133 |
catgacagaaacaaactcaacaaatcgcagcatcccaaagaactcaccccctcgccacattgaaaagtgagataaattagttgaccatacacctttga |
28101036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 28104088 - 28103872
Alignment:
| Q |
24 |
gactcgaataatacaaactgttgcaggagacggtagaaacaaactgcaggccaaaaaaccagattactctagagcaaaacagaaacacat-cataggcta |
122 |
Q |
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||||||||||| |||||||| ||||| ||| || | |||||||||||||| || ||||||||| ||| |||| |||||| |||| ||||||||| |
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| T |
28104088 |
gactcgaataacacaaactgatgcagcagatggaaaaaacaaactgcaggtgaaccaaccagatttctcaagagtaaaacataaacgtggacataggcta |
28103989 |
T |
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| Q |
123 |
gaagaacaaccaagcagcagcctccgtacctcacaattttgaaacatcgctaaaagccacatagaactactaccgagaatcaattaaggaattagaccat |
222 |
Q |
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| T |
28103988 |
gaagaataaccaagcatcagcctccgcacctcacaattctgaaacaatgctaaaatccacatagaactactaccgagaaccggtcaaagaagcagccctt |
28103889 |
T |
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| Q |
223 |
gacagaaacaaactcaa |
239 |
Q |
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| T |
28103888 |
gacagaaacaaactcaa |
28103872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 26641014 - 26640877
Alignment:
| Q |
24 |
gactcgaataatacaaactgttgcaggagacggtagaaacaaactgcaggccaaaaaaccagattactctagagcaaaacagaaacac-atcataggcta |
122 |
Q |
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||||| |||||||||||||| ||||| ||| || ||||||||||||||||| || ||||||||||||| |||| |||||| |||| | || |||||| |
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| T |
26641014 |
gactcaaataatacaaactgatgcagcagatggaagaaacaaactgcaggcgaaccaaccagattactccagagaaaaacataaacgcggacacaggcta |
26640915 |
T |
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| Q |
123 |
gaagaacaaccaagcagcagcctccgtacctcacaatt |
160 |
Q |
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|||||||||||||||||||||||| || |||||||||| |
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| T |
26640914 |
gaagaacaaccaagcagcagcctctgtgcctcacaatt |
26640877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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