View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_73 (Length: 285)
Name: NF21553_high_73
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_73 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 51545058 - 51544801
Alignment:
| Q |
20 |
acttggtccaaagagcctgccaaaaaatgaagttatgtcatgtgctgacaatgtaatggataatgtttttgattatttaaaggaacttaacaaaggttta |
119 |
Q |
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| T |
51545058 |
acttggtccaaagagtctgccaaaaaatgaagttatgccatgtgctgacaatgtaatggataatgtttttgattatttaaaggaacttaacaaaggttta |
51544959 |
T |
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| Q |
120 |
actcaactttgtatccttggaaaagacattgcccgttcactatcttacacttactaccatatgcctactaactctgatacattatttacaattttattta |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51544958 |
actcaactttgtatccttggaaaagacattgcccgttcactatcttacacttactaccatatgcctactaactctgatacattatttacaattttatttt |
51544859 |
T |
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| Q |
220 |
tttttaaatagcaaatatcatagttacaattaatagactacactttcatacctatgct |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51544858 |
tttttaaatagcaaatatcatagttacaattaatagactacactttcatacctgtgct |
51544801 |
T |
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