View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_high_75 (Length: 276)

Name: NF21553_high_75
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_high_75
NF21553_high_75
[»] chr1 (4 HSPs)
chr1 (1-266)||(52470908-52471172)
chr1 (172-249)||(33324223-33324300)
chr1 (171-253)||(30052384-30052466)
chr1 (172-204)||(19757959-19757991)
[»] chr4 (2 HSPs)
chr4 (186-263)||(38838494-38838571)
chr4 (184-247)||(21342461-21342524)
[»] chr6 (2 HSPs)
chr6 (171-256)||(17211419-17211504)
chr6 (171-204)||(31946492-31946525)
[»] chr5 (1 HSPs)
chr5 (174-254)||(19932186-19932266)
[»] chr8 (1 HSPs)
chr8 (173-256)||(33525291-33525374)
[»] chr7 (1 HSPs)
chr7 (171-257)||(20118025-20118111)
[»] chr2 (1 HSPs)
chr2 (171-204)||(35658382-35658415)
[»] chr3 (1 HSPs)
chr3 (175-263)||(44558324-44558412)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 52470908 - 52471172
Alignment:
Q  1 cattcaaaaatacatgcatagtaataaaatgttgaaaagtccaccctattagccgtggccattttggtggttaaaaatgatgatggcgcggaaaggttca 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52470908 cattcaaaaatatatgcatagtaataaaatgttgaaaagtccaccctattagccgtggccattttggtggttaaaaatgatgatggcgcggaaaggttca 52471007  T
Q  101 atcaaattggagacttcataccctaaca--cactcagtcaatctaccatttttgttatatannnnnnnnaatttggtttcgcgtccgtacgcgggttcgc 198  Q
    ||||||||||||||||||||||||||||  | |||| |||||||||||  |||||||||||        |||||| |||||| |||||||| | |||||     
T  52471008 atcaaattggagacttcataccctaacactctctcactcaatctacca--tttgttatata-tttttttaatttgatttcgcatccgtacgtgagttcgt 52471104  T
Q  199 tgggttatgcatgtaatgagtgaatatttgttaagatagtttagggttgattcacttggtatgttctt 266  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  52471105 tgggttatgcatgtaatgagtgaatatttgttaggatagtttaaggttgatccacttggtatgttctt 52471172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 33324223 - 33324300
Alignment:
Q  172 tggtttcgcgtccgtacgcgggttcgctgggttatgcatgtaatgagtgaatatttgttaagatagtttagggttgat 249  Q
    ||||||||||| |||||||||||||||||||||    |||| || ||||||| ||||||||| ||| |||| ||||||    
T  33324223 tggtttcgcgttcgtacgcgggttcgctgggttgcatatgtgatcagtgaatttttgttaaggtagattagagttgat 33324300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 30052466 - 30052384
Alignment:
Q  171 ttggtttcgcgtccgtacgcgggttcgctgggttatgcatgtaatgagtgaatatttgttaagatagtttagggttgattcac 253  Q
    |||||||||| | |||||||||||||||| ||||   ||||| || ||||||  || || | |||||||||||||||||||||    
T  30052466 ttggtttcgcattcgtacgcgggttcgcttggttgcacatgtgattagtgaactttcgtcaggatagtttagggttgattcac 30052384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 19757959 - 19757991
Alignment:
Q  172 tggtttcgcgtccgtacgcgggttcgctgggtt 204  Q
    |||||||||| ||||||||||||||||||||||    
T  19757959 tggtttcgcgcccgtacgcgggttcgctgggtt 19757991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 38838494 - 38838571
Alignment:
Q  186 tacgcgggttcgctgggttatgcatgtaatgagtgaatatttgttaagatagtttagggttgattcacttggtatgtt 263  Q
    |||||||||||||||| ||  ||  ||||||||||||||||||||  ||||||||| ||||||| |||||||| ||||    
T  38838494 tacgcgggttcgctggcttgcgcccgtaatgagtgaatatttgttctgatagtttaaggttgatccacttggtctgtt 38838571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 21342461 - 21342524
Alignment:
Q  184 cgtacgcgggttcgctgggttatgcatgtaatgagtgaatatttgttaagatagtttagggttg 247  Q
    |||| ||||||||||||| ||   | |||||||||||||||||||||| ||||||||| |||||    
T  21342461 cgtatgcgggttcgctggattgcacttgtaatgagtgaatatttgttaggatagtttaaggttg 21342524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 17211419 - 17211504
Alignment:
Q  171 ttggtttcgcgtccgtacgcgggttcgctgggttatgcatgtaatgagtgaatatttgttaagatagtttagggttgattcacttg 256  Q
    ||||||||||||||||||||||||| | ||||||   | ||| || ||||||| ||||||| ||||| |||||| |||| ||||||    
T  17211419 ttggtttcgcgtccgtacgcgggtttgttgggttgcacttgtgataagtgaatttttgttatgatagattagggctgatccacttg 17211504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 31946492 - 31946525
Alignment:
Q  171 ttggtttcgcgtccgtacgcgggttcgctgggtt 204  Q
    ||||||||||| ||||||||||||||||||||||    
T  31946492 ttggtttcgcgcccgtacgcgggttcgctgggtt 31946525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 19932266 - 19932186
Alignment:
Q  174 gtttcgcgtccgtacgcgggttcgctgggttatgcatgtaatgagtgaatatttgttaagatagtttagggttgattcact 254  Q
    |||||||| | | ||||||||||||||||||  ||  |||||  |||||| ||||||||||||| ||||||||||| ||||    
T  19932266 gtttcgcgcctgcacgcgggttcgctgggttgcgcccgtaattggtgaatttttgttaagatagattagggttgatccact 19932186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 33525374 - 33525291
Alignment:
Q  173 ggtttcgcgtccgtacgcgggttcgctgggttatgcatgtaatgagtgaatatttgttaagatagtttagggttgattcacttg 256  Q
    ||||||||| | ||||||||||||||||||||   ||||| || |||| || ||||||||||||| || | |||||| ||||||    
T  33525374 ggtttcgcgcctgtacgcgggttcgctgggttgcacatgtgattagtgtatttttgttaagatagatttgagttgatccacttg 33525291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 257
Target Start/End: Complemental strand, 20118111 - 20118025
Alignment:
Q  171 ttggtttcgcgtccgtacgcgggttcgctgggttatgcatgtaatgagtgaatatttgttaagatagtttagggttgattcacttgg 257  Q
    ||||||||||| |||||||||||||||| | |||  || | | || ||||||| ||||||| ||||| |||| |||||| |||||||    
T  20118111 ttggtttcgcgcccgtacgcgggttcgccgagttgcgcctatgattagtgaatttttgttaggatagattagagttgatccacttgg 20118025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 35658382 - 35658415
Alignment:
Q  171 ttggtttcgcgtccgtacgcgggttcgctgggtt 204  Q
    ||||||||||||||||||||||||||||| ||||    
T  35658382 ttggtttcgcgtccgtacgcgggttcgctaggtt 35658415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 44558412 - 44558324
Alignment:
Q  175 tttcgcgtccgtacgcgggttcgctgggttatgcatgtaatgagtgaatatttgttaagatagtttagggttgattcacttggtatgtt 263  Q
    |||||||  |||||||||||||| ||||||  |   |||| | |||||||||||||| ||||  ||||||||||| |||||||| ||||    
T  44558412 tttcgcgctcgtacgcgggttcgttgggttgcgttcgtaacgcgtgaatatttgttaggataaattagggttgatccacttggtctgtt 44558324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University