View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_high_77 (Length: 273)
Name: NF21553_high_77
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_77 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 25381538 - 25381291
Alignment:
| Q |
10 |
acatcatcactgtcctgctcagttgttgcaacctcttcctgcacattcagattacaagagtcttgaatatttgtaaggtcaattagataataagaaatat |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25381538 |
acatcagcactgtcctgctcagttgttgcaacctgttcctgcacattcagattacaagagtcttgaatatttgcaaggtcaattagataataagaaatat |
25381439 |
T |
|
| Q |
110 |
tacaattatgtggacttagttaaagatattctaaatctataaatgaagtggtaaaaatatggcaataaaaattgtctttactgtgctaggatatgtcttg |
209 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25381438 |
tacaattatgtggatttagttaaagatattctaaatctataaatgaagtggtaaagatatggcaataaaaattgtctttactgtgctaggatatgtcttg |
25381339 |
T |
|
| Q |
210 |
aaagttgttacgtcatatgacatatacatgatcgtgaagtgttgttcc |
257 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25381338 |
aaagtttttacgtcatatggcatatacatgatcgtgaagtgttgttcc |
25381291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 38338647 - 38338718
Alignment:
| Q |
21 |
gtcctgctcagttgttgcaacctcttcctgcacattcagattacaagagtcttgaatatttgtaaggtcaatta |
94 |
Q |
| |
|
||||||||||| ||||||||||| |||||| ||||||||| |||||||| ||||| ||| | ||||||||||| |
|
|
| T |
38338647 |
gtcctgctcagctgttgcaaccttttcctg--cattcagataacaagagttttgaaaattagcaaggtcaatta |
38338718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 38330246 - 38330295
Alignment:
| Q |
22 |
tcctgctcagttgttgcaacctcttcctgcacattcagattacaagagtctt |
73 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
38330246 |
tcctgctcagctgttgcaacctcttcctgcac--tcagataacaagagtctt |
38330295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University