View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_high_80 (Length: 268)

Name: NF21553_high_80
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_high_80
NF21553_high_80
[»] chr5 (3 HSPs)
chr5 (18-255)||(41722692-41722929)
chr5 (59-255)||(34359471-34359667)
chr5 (18-67)||(41718154-41718203)
[»] chr4 (4 HSPs)
chr4 (60-255)||(48697661-48697856)
chr4 (60-255)||(30946023-30946218)
chr4 (50-255)||(42270185-42270390)
chr4 (153-247)||(2003173-2003267)
[»] chr6 (8 HSPs)
chr6 (47-255)||(26976720-26976928)
chr6 (50-255)||(27874539-27874744)
chr6 (62-255)||(18967350-18967543)
chr6 (59-175)||(21966493-21966604)
chr6 (59-119)||(30968569-30968629)
chr6 (153-247)||(1472398-1472492)
chr6 (57-94)||(1472341-1472378)
chr6 (193-249)||(21965669-21965725)
[»] chr3 (3 HSPs)
chr3 (50-255)||(54545427-54545632)
chr3 (47-255)||(5819102-5819310)
chr3 (57-94)||(42589352-42589389)
[»] chr8 (3 HSPs)
chr8 (50-255)||(9439921-9440126)
chr8 (57-94)||(24594367-24594404)
chr8 (153-247)||(24594424-24594518)
[»] chr2 (3 HSPs)
chr2 (58-255)||(829761-829958)
chr2 (58-247)||(28715361-28715550)
chr2 (57-250)||(13840763-13840960)
[»] scaffold0074 (1 HSPs)
scaffold0074 (62-255)||(27877-28070)
[»] chr7 (4 HSPs)
chr7 (62-255)||(2323956-2324149)
chr7 (55-255)||(22510199-22510398)
chr7 (153-247)||(7504696-7504790)
chr7 (57-94)||(7504639-7504676)
[»] chr1 (1 HSPs)
chr1 (60-161)||(41413422-41413523)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 41722929 - 41722692
Alignment:
Q  18 catatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722929 catatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 41722830  T
Q  118 ccaactccagttgctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41722829 ccaactccagttgctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatc 41722730  T
Q  218 attggtgtgaatcttctgcatgtccacacttccctcct 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41722729 attggtgtgaatcttctgcatgtccacacttccctcct 41722692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 59 - 255
Target Start/End: Complemental strand, 34359667 - 34359471
Alignment:
Q  59 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 158  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34359667 atgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtatctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 34359568  T
Q  159 cgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 255  Q
    |||||||||| |||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||    
T  34359567 cgacaccatataaacttgtcagcgttgatcggctttgtcattacatccgctaggttatcattggtgtgaatcttttgcatatccacgcttccctcct 34359471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 41718203 - 41718154
Alignment:
Q  18 catatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718203 catatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 41718154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 48697661 - 48697856
Alignment:
Q  60 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 159  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  48697661 tgttcacaatctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttgccgacttcggttgctacgtttccaataggccatacgaggatc 48697760  T
Q  160 gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 255  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697761 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 48697856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 30946023 - 30946218
Alignment:
Q  60 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 159  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||||    
T  30946023 tgttcacagtctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttaccgacttcggttgctacgtttccaataggccatacgaggatc 30946122  T
Q  160 gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 255  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946123 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 30946218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 50 - 255
Target Start/End: Complemental strand, 42270390 - 42270185
Alignment:
Q  50 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  42270390 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 42270291  T
Q  150 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 249  Q
    ||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  42270290 tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 42270191  T
Q  250 cctcct 255  Q
    | ||||    
T  42270190 cttcct 42270185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 2003267 - 2003173
Alignment:
Q  153 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 247  Q
    |||||||||||||||  ||| || |||   ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  2003267 gaggatcgacaccatgtaaatttgtcaacattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacact 2003173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 47 - 255
Target Start/End: Original strand, 26976720 - 26976928
Alignment:
Q  47 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  26976720 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 26976819  T
Q  147 ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac 246  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |    
T  26976820 ccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttttgcatatccacgc 26976919  T
Q  247 ttccctcct 255  Q
    |||||||||    
T  26976920 ttccctcct 26976928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 50 - 255
Target Start/End: Original strand, 27874539 - 27874744
Alignment:
Q  50 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  27874539 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 27874638  T
Q  150 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 249  Q
    ||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  27874639 tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 27874738  T
Q  250 cctcct 255  Q
    | ||||    
T  27874739 cttcct 27874744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 62 - 255
Target Start/End: Complemental strand, 18967543 - 18967350
Alignment:
Q  62 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 161  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||| || | ||  ||||||| |||| |||||||||||| |||||||||    
T  18967543 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctctaccttacccattcatgttgctatgttttcaataggccataggaggatcga 18967444  T
Q  162 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 255  Q
    ||||||| |||||| ||||  ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18967443 caccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 18967350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 21966604 - 21966493
Alignment:
Q  59 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactcc-agttgctacgtttccaataggccatacgagga 157  Q
    ||||||||||| ||||||||| || ||||||||| || || ||||||||||||||||||||||||||   |||||||||||| |      ||||||||||    
T  21966604 atgttcacaatatcccacttacagccacttttgtaagatttcaaaatctctctaccttgccaactccttattgctacgtttcaa------catacgagga 21966511  T
Q  158 tcgacaccatacaaactt 175  Q
    ||||||||||||||||||    
T  21966510 tcgacaccatacaaactt 21966493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 30968629 - 30968569
Alignment:
Q  59 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgcc 119  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  30968629 atgttcacaatctcccacttaaagtcacttttgtgagcactcaaaatctctctaccttgcc 30968569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 1472398 - 1472492
Alignment:
Q  153 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 247  Q
    |||||||||||||||  ||| || ||||  ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  1472398 gaggatcgacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacact 1472492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 1472341 - 1472378
Alignment:
Q  57 acatgttcacaatctcccacttaaagtcacttttgtga 94  Q
    |||| |||||||||||||||||||||||||||||||||    
T  1472341 acatcttcacaatctcccacttaaagtcacttttgtga 1472378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 21965725 - 21965669
Alignment:
Q  193 ttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 249  Q
    |||||||||||||| |||| |||||||||||||||   |||||||| ||||| ||||    
T  21965725 ttgtcattacatcttctaggttatcattggtgtgagcattctgcatatccacccttc 21965669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 50 - 255
Target Start/End: Complemental strand, 54545632 - 54545427
Alignment:
Q  50 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||| ||||||||| |||||||||||||||    
T  54545632 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagcctctctaccttgccaacttcagttgctatgtttccaataggcca 54545533  T
Q  150 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 249  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  54545532 tacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 54545433  T
Q  250 cctcct 255  Q
    | ||||    
T  54545432 cttcct 54545427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 47 - 255
Target Start/End: Original strand, 5819102 - 5819310
Alignment:
Q  47 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 146  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  5819102 atgtgttcacacatgttcacaatctcccacttaaagttacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 5819201  T
Q  147 ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac 246  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |    
T  5819202 ccatacgaggatcgacgccatataaacttgtcagtgttgatcggctttgtcattacaactgctaggttatcattagtgtgaatcttttgcatatccacgc 5819301  T
Q  247 ttccctcct 255  Q
    |||||||||    
T  5819302 ttccctcct 5819310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 42589389 - 42589352
Alignment:
Q  57 acatgttcacaatctcccacttaaagtcacttttgtga 94  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42589389 acatcttcacaatctcccacttaaagtcacttttgtga 42589352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 50 - 255
Target Start/End: Original strand, 9439921 - 9440126
Alignment:
Q  50 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9439921 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactccagttgctacgtttccaataggcca 9440020  T
Q  150 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 249  Q
    ||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  9440021 tacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 9440120  T
Q  250 cctcct 255  Q
    | ||||    
T  9440121 cttcct 9440126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 24594367 - 24594404
Alignment:
Q  57 acatgttcacaatctcccacttaaagtcacttttgtga 94  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24594367 acatcttcacaatctcccacttaaagtcacttttgtga 24594404  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 24594424 - 24594518
Alignment:
Q  153 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 247  Q
    ||||||| |||||||  ||| || ||||  ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  24594424 gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacact 24594518  T

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Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 58 - 255
Target Start/End: Complemental strand, 829958 - 829761
Alignment:
Q  58 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 157  Q
    |||||||||||| ||||||||||||  |||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  829958 catgttcacaatatcccacttaaagctacttttgtgagcattcaaagtctctctaccttgccaactccagttgctatgtttccaataggccatacgagga 829859  T
Q  158 tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 255  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||| ||||| ||||    
T  829858 tcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctacatatccacgcttccttcct 829761  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 28715550 - 28715361
Alignment:
Q  58 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 157  Q
    |||||||||||||||||||||||||  || ||| | ||  | |||||||||||||||| ||||||| | |||||||| ||| |||||||||||| |||||    
T  28715550 catgttcacaatctcccacttaaagctacattttttagaattcaaaatctctctacctcgccaacttccgttgctacattttcaataggccatatgagga 28715451  T
Q  158 tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 247  Q
    ||||||| ||| |||||| ||||  ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||    
T  28715450 tcgacactatagaaacttgtcagcattgatcgactttgtcattacatctgctaggttatcattggtgtgaatcttatgcatattcacact 28715361  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 250
Target Start/End: Original strand, 13840763 - 13840960
Alignment:
Q  57 acatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacg--- 153  Q
    ||||||| |||||||| ||||||||   ||||||||||||||| ||||| ||||| ||||||||||||  ||||||| |||||||||||| |||||        
T  13840763 acatgtttacaatctctcacttaaatctacttttgtgagcttctaaaatttctctgccttgccaactcttgttgctatgtttccaataggtcatacttcc 13840862  T
Q  154 -aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttcc 250  Q
     ||||||||| |||||||||||||| ||  |||||||| |||||||  ||||| | ||| |||||| | || |||||||||||||  |||| ||||||    
T  13840863 caggatcgacgccatacaaacttattagcattgatcggttttgtcaccacatccgttaggttatcacttgtctgaatcttctgcacatccatacttcc 13840960  T

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Target: scaffold0074 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 62 - 255
Target Start/End: Original strand, 27877 - 28070
Alignment:
Q  62 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 161  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||| | ||  ||||||||||||||||||||||||| |||||||||    
T  27877 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctttaccttgcccattcatgttgctacgtttccaataggccataggaggatcga 27976  T
Q  162 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 255  Q
    ||||||| |||||| ||||  ||||| || ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27977 caccatataaacttgtcagcattgattggttttgtaatcacatctactagattatcattggtgtgaatcttctgcatgtccacacttccctcct 28070  T

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Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 62 - 255
Target Start/End: Original strand, 2323956 - 2324149
Alignment:
Q  62 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 161  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||| |||||||| ||||||    
T  2323956 ttcacaatctcccacttaaagccacttttgtgagcttccaaaatctctctaccttgcccattcatgttgctacgtttccaatagtccatacgatgatcga 2324055  T
Q  162 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 255  Q
    ||||||| ||||||   ||  ||||| ||||||||||| |||||||||||  ||||||||||||| ||||||||||| ||||||||||||||||    
T  2324056 caccatataaacttggtagcattgattggctttgtcatcacatctgctagggtatcattggtgtggatcttctgcatatccacacttccctcct 2324149  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 255
Target Start/End: Complemental strand, 22510398 - 22510199
Alignment:
Q  55 acacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacga 154  Q
    |||||||||||| |||||  | ||||||  | ||||| |||||| |||||| ||||||||||||||||||| ||| ||| ||||  ||||||||| |       
T  22510398 acacatgttcactatctc--aattaaagctatttttgggagctttcaaaatatctctaccttgccaactcctgtttctatgttttgaataggccacagag 22510301  T
Q  155 ggatcgacaccatacaaacttatcagtgttga-tcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctc 253  Q
    |||| ||||||||| |||||||||| | |||| | | |||| |||| ||||||||| | |||||||  || ||||||||| |||| ||||||  ||||||    
T  22510300 ggattgacaccatataaacttatcaatattgattagactttttcatcacatctgcttggttatcatcagtttgaatcttcggcatatccacatgtccctc 22510201  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 7504696 - 7504790
Alignment:
Q  153 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 247  Q
    |||||||||||||||  ||| || ||||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| || ||||| || |||||    
T  7504696 gaggatcgacaccatgtaaatttgtcagtattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttttgcatatcaacact 7504790  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 7504639 - 7504676
Alignment:
Q  57 acatgttcacaatctcccacttaaagtcacttttgtga 94  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  7504639 acatcttcacaatctcccacttaaagttacttttgtga 7504676  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 161
Target Start/End: Original strand, 41413422 - 41413523
Alignment:
Q  60 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 159  Q
    |||||||||||| ||| |||||   ||||||| |||||| |||||| ||||| ||||||| | ||  ||||||| ||||| ||||| ||| ||||| |||    
T  41413422 tgttcacaatcttccatttaaaactacttttgcgagctttcaaaatatctctgccttgcccattcttgttgctatgtttctaatagaccaaacgagaatc 41413521  T
Q  160 ga 161  Q
    ||    
T  41413522 ga 41413523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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