View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_88 (Length: 251)
Name: NF21553_high_88
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_88 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 29907942 - 29908181
Alignment:
| Q |
3 |
caaaaaggctttaaaagaaaagtaataatcattaaccaaattaaccaaaataataatcaaaggcaaacaaacagcaatacaaaccttctcatcaacaaac |
102 |
Q |
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| T |
29907942 |
caaaaaggctttaaaagaaaagcaataatcattaaccaaattaaccaaaataataatcaaaggcaaacaaacagcaatacaaaccttctcatcaacaaac |
29908041 |
T |
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| Q |
103 |
accatctcaatcgaattgatctgttatgattgaagaaaagcacgcacctcccacaaacgaacaacatgaagcttgaatccccaagactcctttccaggaa |
202 |
Q |
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| T |
29908042 |
accatctcaattgaattgatctgttatgattgaagaaaatcacgcacctcccacaaacgaacaacacgaagcttgaatctccaagactctcttccaggaa |
29908141 |
T |
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| Q |
203 |
caacatcagacaccaaatcaaagctgcgatacctctgtga |
242 |
Q |
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| T |
29908142 |
gaacatcagacagcaaatcaaagctgcgatacctctgtga |
29908181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 229
Target Start/End: Original strand, 29908839 - 29908984
Alignment:
| Q |
84 |
aaccttctcatcaacaaacaccatctcaatcgaattgatctgttatgattgaagaaaagcacgcacctcccacaaacgaacaacatgaagcttgaatccc |
183 |
Q |
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||||||||||||||| ||||||||||||| |||||| | ||||| | |||||||| ||| | ||||||||| ||| || ||| ||| |||||| | |
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| T |
29908839 |
aaccttctcatcaaccaacaccatctcaaccgaattcacctgttcaggatgaagaaacgcaggagcctcccacagacgcaccacacgaacaatgaatctc |
29908938 |
T |
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| Q |
184 |
caagactcctttccaggaacaacatcagacaccaaatcaaagctgc |
229 |
Q |
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| T |
29908939 |
caagactcctttccaggagcagcatcagataacagatcaaaactgc |
29908984 |
T |
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