View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_9 (Length: 653)
Name: NF21553_high_9
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 24 - 644
Target Start/End: Complemental strand, 7905509 - 7904897
Alignment:
| Q |
24 |
cactctctctggtggaaaaactgtcaactgtttgattgttgcttgttgttgcttctataaaacgatggcatctccaccaattagacgttaacaacgcctt |
123 |
Q |
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| T |
7905509 |
cactctctctggtggcaaaactgtcaattgtttgattgttgcttgctgttacttctattaaacgatggcatctccaccaattagacgctaacaacacctt |
7905410 |
T |
|
| Q |
124 |
cttgcacggtgatcttcaagaggatgtctacatgcaccctcctcaaggtgtttctcctcctaggcctgggcaggtttgtaagctgctcaagtccttatac |
223 |
Q |
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| T |
7905409 |
cttgcacggtgatcttcaagaggatgtctacatgcaccctcctcaaggtgtttctcctcctaggcctgggcaggtttgtaagctgctcaagtccttatac |
7905310 |
T |
|
| Q |
224 |
ggcctcaaacatgccagccggcgttggtttgaaaagcttatttcactcctcctgaccattggttttgtgcaagcttcagctgatcactcctttttaattc |
323 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7905309 |
ggcctcaaacaagccagccggcgttggtttgaaaagcttatttcactcctcctgaccattggttttgtgcaagcttcagctgatcactcctttttaattc |
7905210 |
T |
|
| Q |
324 |
gtgcttctccaacttctttcacagctttattaatatacgtgaatgacattatattggctggtgactgccttgctgcttttgctgagattaagcaattgct |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7905209 |
gtgcttctccaacttctttcacagctttattaatatacgtgaatgacattatattggctggtgactgccttgctgcttttgctgagattaagcaattgct |
7905110 |
T |
|
| Q |
424 |
tgatcatcattttcgtatcaaagaccttggccagctcaagttctttcttggcttggaggttgctcattcctcaaaaggtttaaaggtatatccctctgtc |
523 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7905109 |
tgatcatcattttcgtatcaaagacctaggctagctcaagttctttcttggcttggaggttgctcattcctcaaa--------aggtatatccctctgtc |
7905018 |
T |
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| Q |
524 |
aacgcaaatattgcctcgacttactttcagatgcaggcctaaccacttgtaaaccggttagtactcctcttgattatgcttgtcgtctccacattgatga |
623 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
7905017 |
aacgcaaatattgcctcgacttactttcagatgcaggcctaaccacttgtaaatcggttagtactcctcttgattatgcttgtcttcttcacattgatga |
7904918 |
T |
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| Q |
624 |
tggacctccctttgatgatgt |
644 |
Q |
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| T |
7904917 |
tggacctccctttgatgatgt |
7904897 |
T |
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