View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_high_92 (Length: 242)
Name: NF21553_high_92
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_high_92 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 43619154 - 43619297
Alignment:
| Q |
76 |
ctgaatgcattgtgtatatacaacatgttccggcaatagtttgcataataaataaaggctaactgtctaaccaattagctaaaaacaaggaaaagttaat |
175 |
Q |
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| T |
43619154 |
ctgaatgcattgtgtatatacaacatcttccggcaatagtttgcataataaataaaggctaactgtctaaccaattagctaaaaacaaggaaaagttaat |
43619253 |
T |
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| Q |
176 |
tacttaggaaacaagttaactaaccctaaaacaaactaaacaag |
219 |
Q |
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| T |
43619254 |
tacttaggaaacaagttaactaaccctaaaacaaactaaacaag |
43619297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 12198126 - 12198248
Alignment:
| Q |
90 |
tatatacaacatgttccggcaatagtttgcataataaataaaggctaactgtctaaccaattagctaaaaacaaggaaaagttaattacttaggaaacaa |
189 |
Q |
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| T |
12198126 |
tatatacaacatgttctagctatagcttgcattacaagtaaatgctaattgtctaactaactttctaaaaacaaggtaaag-tagttacttaggtagcaa |
12198224 |
T |
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| Q |
190 |
gttaactaaccctaaaacaaacta |
213 |
Q |
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| T |
12198225 |
ggtaactaaccctaaatcaaacta |
12198248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 25518733 - 25518801
Alignment:
| Q |
150 |
ttagctaaaaacaaggaaa-agttaattacttaggaaacaagttaactaaccctaaaacaaactaaacaa |
218 |
Q |
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| T |
25518733 |
ttagctaaaaacaaggaaatagttagttacttatgaaacaagc-aactagccctaaaacaaactaaacaa |
25518801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 31540114 - 31540078
Alignment:
| Q |
133 |
gctaactgtctaaccaattagctaaaaacaaggaaaa |
169 |
Q |
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| T |
31540114 |
gctaactgtctaaccaactagctaaaaacaaggaaaa |
31540078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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