View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_low_1 (Length: 1079)
Name: NF21553_low_1
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 525 - 1063
Target Start/End: Original strand, 42196996 - 42197543
Alignment:
| Q |
525 |
gattcttttattcacccagaacatgttctcatgaaagacacttttgagaattcactttacaattttttacaagataaaaaagattcaatatacgtaactg |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42196996 |
gattcttttattcacccagaacatgttctcatgaaagacacttttgagaattcactttacaattttttacaagataaaaaagattcaatatacgtaactg |
42197095 |
T |
|
| Q |
625 |
aatttcttaattaatgacatcaaagagtgtatgagacaaggacttggtaatttttaattctgcccaaaataataataagacaaacacttctcaacattga |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42197096 |
aatttcttaattaatgacatcaaagagtgtatgagacaaggacttggtaatttttaattctgcccaaaataataataagacaaacacttctcaacattga |
42197195 |
T |
|
| Q |
725 |
agcagtctttgaatcattgttgtttttgttaagtgataaatgatacttaagatggagattgaaagcagaagtttgaaaaatgagctaaaattcttttata |
824 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42197196 |
agcagtctttgaatcattgttgtttttgttaagtgataaatgatacttaagatggagattgaaagcataagtttgaaaaatgagctaaaattcttttata |
42197295 |
T |
|
| Q |
825 |
attacaacagaaccgtttaacatgg---------gtgattaactgtggaaagaaagtgagaaaaacaaaccatgatttgtgtaaacatgaatagcaagat |
915 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42197296 |
attacaacagaaccgtttaacatgggtgatttgtgtgattaactgtggaaagaaagtgagaagaacaaaccatgatttgtgtaaacatgaatagcaagat |
42197395 |
T |
|
| Q |
916 |
actaattcacatatcaattggatcaaacaatagtatacatatttatatatatagtctcagaaatacgatacatgtaagtcacccaactttaaagtttctt |
1015 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
42197396 |
actaattcacatatcaattggatcaaacaatagtatacatatttatatatatagtctcagaaatacgttacatgtaagtgacccaactttaaagtttctt |
42197495 |
T |
|
| Q |
1016 |
caatttccttcatagattcattggtccttccttcttgtgggttgttga |
1063 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42197496 |
caatttccttcatagattcattagtccttccttcttgtgggttgttga |
42197543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 42196480 - 42196622
Alignment:
| Q |
13 |
ctgtgatggtttgcaagatatttttattttctcatctcataggatatatatttggatnnnnnnnggatatattacattatagtatttcactt-agttgtt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
42196480 |
ctgtgatggtttgcaagatatttttattttcccatctcataggatatatatttggataaaaaaagaatatattacattatagtatttcactttagttgtt |
42196579 |
T |
|
| Q |
112 |
attattattattactactttgcaatcgtttaattgacgtaattc |
155 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42196580 |
attattattattactactttgcaatcg-ttaattgacgtaattc |
42196622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 432 - 494
Target Start/End: Original strand, 42196905 - 42196965
Alignment:
| Q |
432 |
tcacaaccaaacacaccctaaaagttacttctgatctattacattataagtaaatataaaata |
494 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42196905 |
tcacaaccaaacacatcctaaa--ttacttctgatctattacattataagtaaatataaaata |
42196965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 42196766 - 42196803
Alignment:
| Q |
299 |
ttttgtcatttcaaaaatcagacacacttctttctctt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42196766 |
ttttgtcatttcaaaaatcagacacacttctttctctt |
42196803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 247
Target Start/End: Original strand, 42196683 - 42196714
Alignment:
| Q |
216 |
gtggaatgtgaatttatttgaccttaatttaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42196683 |
gtggaatgtgaatttatttgaccttaatttaa |
42196714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 359
Target Start/End: Complemental strand, 5077213 - 5077179
Alignment:
| Q |
325 |
cttctttctcttataccaaataatacatcaaattt |
359 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
5077213 |
cttctttctcttataccaaacaatacatcaaattt |
5077179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 40686666 - 40686779
Alignment:
| Q |
9 |
gaacctgtgatggtttgcaagatatttttattttctcatctcataggatatatatttggatnnnnnnnggatatattacattatagtatttcac-ttagt |
107 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| | ||||| ||||||||||||||||||| ||||||||||||| |||||||||||| || || |
|
|
| T |
40686666 |
gaacctgtgatggtttgcaagatctttt--tttccccatcttataggatatatatttggat-aaaaaaggatatattacatcatagtatttcactttggt |
40686762 |
T |
|
| Q |
108 |
tgttattattattatta |
124 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40686763 |
ggttattattattatta |
40686779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 4795980 - 4795948
Alignment:
| Q |
325 |
cttctttctcttataccaaataatacatcaaat |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4795980 |
cttctttctcttataccaaataatacatcaaat |
4795948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 359
Target Start/End: Complemental strand, 25659035 - 25659001
Alignment:
| Q |
325 |
cttctttctcttataccaaataatacatcaaattt |
359 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
25659035 |
cttctttctcttataccaaacaatacatcaaattt |
25659001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 327 - 356
Target Start/End: Original strand, 42308652 - 42308681
Alignment:
| Q |
327 |
tctttctcttataccaaataatacatcaaa |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42308652 |
tctttctcttataccaaataatacatcaaa |
42308681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University