View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_105 (Length: 215)
Name: NF21553_low_105
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_105 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 40120951 - 40121110
Alignment:
| Q |
32 |
tggaagaagcggtgaagggttgcaagaaagatttagggtatgctgcaaatgatgctgttacagaaactgaactaaccaaaatccgtcttgtgagagcctt |
131 |
Q |
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| T |
40120951 |
tggaagaagcggtgaagggttgcaagaaagatttagggtatgctgcaaatgatgctgttacagaaactgaactaaccaaaatccgtcttgtgcgaccctt |
40121050 |
T |
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| Q |
132 |
tgttgaaacacaagatccatcttctaaggtactactagtactacctaacctcttcatacataattt |
197 |
Q |
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| T |
40121051 |
tgttgaaacacaagatccatcttctaaggtac------tactacctaacctcttcatacataattt |
40121110 |
T |
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Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 40113733 - 40113822
Alignment:
| Q |
75 |
tgcaaatgatgctgttacagaaactgaactaaccaaaatccgtcttgtgagagcctttgttgaaacacaagatccatcttctaaggtact |
164 |
Q |
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| T |
40113733 |
tgcaaatgatgttgtcacagaaactgaactaaccaaaatccgtcttgtgagagcctttgttgaaacacaagatccatcttctaaggtact |
40113822 |
T |
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